View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0288_low_20 (Length: 252)

Name: NF0288_low_20
Description: NF0288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0288_low_20
NF0288_low_20
[»] chr4 (4 HSPs)
chr4 (131-252)||(2671625-2671745)
chr4 (12-60)||(20946135-20946183)
chr4 (131-250)||(20945946-20946064)
chr4 (12-60)||(2671816-2671864)
[»] chr3 (7 HSPs)
chr3 (131-250)||(1677068-1677186)
chr3 (131-252)||(55196658-55196779)
chr3 (12-60)||(1677257-1677305)
chr3 (12-60)||(13645214-13645262)
chr3 (12-60)||(55196850-55196898)
chr3 (12-58)||(26538698-26538744)
chr3 (12-56)||(27662345-27662389)
[»] chr8 (2 HSPs)
chr8 (131-252)||(7274507-7274627)
chr8 (12-58)||(7274388-7274434)
[»] chr2 (5 HSPs)
chr2 (12-60)||(5696106-5696154)
chr2 (13-57)||(30546028-30546072)
chr2 (131-194)||(5696225-5696288)
chr2 (215-252)||(5696308-5696345)
chr2 (208-252)||(30545724-30545768)
[»] chr1 (3 HSPs)
chr1 (12-60)||(43882328-43882376)
chr1 (131-194)||(43882194-43882257)
chr1 (216-252)||(43882137-43882173)
[»] chr7 (1 HSPs)
chr7 (15-60)||(5975394-5975439)


Alignment Details
Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 131 - 252
Target Start/End: Complemental strand, 2671745 - 2671625
Alignment:
Q  131 agtccctctaatagccaattgtcagctcatcatatgccacatattagtccgttagccagagaagcgnnnnnnnnnacggaaatggacggcagggacgaat 230  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||         ||||||| |||||||||||||||||    
T  2671745 agtccctctaatagccaattgtcagctcatcatatggcacatattagtccgttagccagagaatcg-tttttttgacggaaacggacggcagggacgaat 2671647  T
Q  231 gtcaaaatattaagtaaataca 252  Q
    |||||||| |||||||||||||    
T  2671646 gtcaaaatgttaagtaaataca 2671625  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 20946183 - 20946135
Alignment:
Q  12 atgaagaagagagaaataacatagtgaggaagaaggtggaaataatatg 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20946183 atgaagaagagagaaataacatagtgaggaagaaggtggaaataatatg 20946135  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 250
Target Start/End: Complemental strand, 20946064 - 20945946
Alignment:
Q  131 agtccctctaatagccaattgtcagctcatcatatgccacatattagtccgttagccagagaagcgnnnnnnnnnacggaaatggacggcagggacgaat 230  Q
    ||||||||||||| ||||||| || |||||||||||||||||||||||||||||| |||  |||||         ||||||| |||| ||||||||||||    
T  20946064 agtccctctaataaccaattgccaactcatcatatgccacatattagtccgttagtcagcaaagcg-tttttttgacggaaacggacagcagggacgaat 20945966  T
Q  231 gtcaaaatattaagtaaata 250  Q
    | |||||| |||||||||||    
T  20945965 gccaaaatgttaagtaaata 20945946  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 2671864 - 2671816
Alignment:
Q  12 atgaagaagagagaaataacatagtgaggaagaaggtggaaataatatg 60  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  2671864 atgaagaagagagaagtaacatagtgaggaagaaggtgaaaataatatg 2671816  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 131 - 250
Target Start/End: Complemental strand, 1677186 - 1677068
Alignment:
Q  131 agtccctctaatagccaattgtcagctcatcatatgccacatattagtccgttagccagagaagcgnnnnnnnnnacggaaatggacggcagggacgaat 230  Q
    ||||||||||||| |||||||||| |||||||||||||||||||| |||||||| |||| ||||||         ||||||| |||||||||||||||||    
T  1677186 agtccctctaataaccaattgtcaactcatcatatgccacatattggtccgttaaccagcgaagcg-tttttttgacggaaacggacggcagggacgaat 1677088  T
Q  231 gtcaaaatattaagtaaata 250  Q
    |||||||| |||||||||||    
T  1677087 gtcaaaatgttaagtaaata 1677068  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 131 - 252
Target Start/End: Complemental strand, 55196779 - 55196658
Alignment:
Q  131 agtccctctaatagccaattgtcagctcatcatatgccacatattagtccgttagccagagaagcgnnnnnnnnnacggaaatggacggcagggacgaat 230  Q
    ||||||||||||| ||||||| || |||||||||||| || |||||||||||||||||| ||||||         ||||||| |||||||||||||||||    
T  55196779 agtccctctaataaccaattgccaactcatcatatgcgacgtattagtccgttagccagcgaagcgtttttttttacggaaacggacggcagggacgaat 55196680  T
Q  231 gtcaaaatattaagtaaataca 252  Q
    |||||| | |||||||||||||    
T  55196679 gtcaaagtgttaagtaaataca 55196658  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 1677305 - 1677257
Alignment:
Q  12 atgaagaagagagaaataacatagtgaggaagaaggtggaaataatatg 60  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1677305 atgaagaagagagaaagaacatagtgaggaagaaggtggaaataatatg 1677257  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 13645214 - 13645262
Alignment:
Q  12 atgaagaagagagaaataacatagtgaggaagaaggtggaaataatatg 60  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  13645214 atgaagaagagagaaagaacatagtgaggaagaaggtggaaagaatatg 13645262  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 55196898 - 55196850
Alignment:
Q  12 atgaagaagagagaaataacatagtgaggaagaaggtggaaataatatg 60  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  55196898 atgaagaagagaggaataacatagtgaggaataaggtggaaataatatg 55196850  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 26538698 - 26538744
Alignment:
Q  12 atgaagaagagagaaataacatagtgaggaagaaggtggaaataata 58  Q
    ||||||||||| |||| |||| |||||||||||||||||||| ||||    
T  26538698 atgaagaagagggaaagaacagagtgaggaagaaggtggaaaaaata 26538744  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 27662345 - 27662389
Alignment:
Q  12 atgaagaagagagaaataacatagtgaggaagaaggtggaaataa 56  Q
    ||||||| |||||||| |||| || ||||||||||||||||||||    
T  27662345 atgaagatgagagaaagaacagagagaggaagaaggtggaaataa 27662389  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 131 - 252
Target Start/End: Original strand, 7274507 - 7274627
Alignment:
Q  131 agtccctctaatagccaattgtcagctcatcatatgccacatattagtccgttagccagagaagcgnnnnnnnnnacggaaatggacggcagggacgaat 230  Q
    |||| |||||||| ||||||| || |||||||||||||||||||||||||||||||||| ||||||         ||||||| ||||||| |||||||||    
T  7274507 agtctctctaataaccaattgccaactcatcatatgccacatattagtccgttagccagcgaagcg-tttttttgacggaaacggacggcggggacgaat 7274605  T
Q  231 gtcaaaatattaagtaaataca 252  Q
    |||||||| |||||||||||||    
T  7274606 gtcaaaatgttaagtaaataca 7274627  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 7274388 - 7274434
Alignment:
Q  12 atgaagaagagagaaataacatagtgaggaagaaggtggaaataata 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  7274388 atgaagaagagagaaataacatagtgaggaagaaggtggaaataata 7274434  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 5696106 - 5696154
Alignment:
Q  12 atgaagaagagagaaataacatagtgaggaagaaggtggaaataatatg 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5696106 atgaagaagagagaaataacatagtgaggaagaaggtggaaataatatg 5696154  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 30546072 - 30546028
Alignment:
Q  13 tgaagaagagagaaataacatagtgaggaagaaggtggaaataat 57  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  30546072 tgaagaagagagaaataacagagtgaggaagaaggtggaaataat 30546028  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 5696225 - 5696288
Alignment:
Q  131 agtccctctaatagccaattgtcagctcatcatatgccacatattagtccgttagccagagaag 194  Q
    |||||||||||||  |||||| || ||||||||||||||| |||||||||||||||||| ||||    
T  5696225 agtccctctaataatcaattgccaactcatcatatgccacgtattagtccgttagccagcgaag 5696288  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 5696308 - 5696345
Alignment:
Q  215 gacggcagggacgaatgtcaaaatattaagtaaataca 252  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  5696308 gacggtagggacgaatgtcaaaatgttaagtaaataca 5696345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 30545768 - 30545724
Alignment:
Q  208 ggaaatggacggcagggacgaatgtcaaaatattaagtaaataca 252  Q
    ||||| ||||| ||||||| ||| |||||||||||||||||||||    
T  30545768 ggaaacggacgacagggaccaatttcaaaatattaagtaaataca 30545724  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 43882376 - 43882328
Alignment:
Q  12 atgaagaagagagaaataacatagtgaggaagaaggtggaaataatatg 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43882376 atgaagaagagagaaataacatagtgaggaagaaggtggaaataatatg 43882328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 43882257 - 43882194
Alignment:
Q  131 agtccctctaatagccaattgtcagctcatcatatgccacatattagtccgttagccagagaag 194  Q
    ||||||||||||| |||||||||  ||||||||||||||  |||||||||||||| ||| ||||    
T  43882257 agtccctctaataaccaattgtcgactcatcatatgccatgtattagtccgttagtcagcgaag 43882194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 43882173 - 43882137
Alignment:
Q  216 acggcagggacgaatgtcaaaatattaagtaaataca 252  Q
    ||||||||||||||||||||||| || ||||||||||    
T  43882173 acggcagggacgaatgtcaaaatgtttagtaaataca 43882137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 5975394 - 5975439
Alignment:
Q  15 aagaagagagaaataacatagtgaggaagaaggtggaaataatatg 60  Q
    ||||||||||||| |||||| ||||||| |||||||||| ||||||    
T  5975394 aagaagagagaaagaacataatgaggaacaaggtggaaagaatatg 5975439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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