View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0288_low_23 (Length: 215)
Name: NF0288_low_23
Description: NF0288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0288_low_23 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 31144701 - 31144637
Alignment:
| Q |
150 |
tccaaatttatataatgccttctttttaagtttcaaggtaaaatgtgtttatgtttgatacattga |
215 |
Q |
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| T |
31144701 |
tccaaatttatataatgccttctttt-aagtttcaaggtaaaatgtgtttatgtttgatacattga |
31144637 |
T |
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Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 1936523 - 1936380
Alignment:
| Q |
4 |
aatttcataatatttgcttcaaatctatcacaatacattatatagcgaacaaatcatattttatcatgcccccagtgattgtgatttgtgaaggttgaga |
103 |
Q |
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| T |
1936523 |
aatttcataatgtttgcatcaaattt-tcacaatacattgtatagcaaacaaatcatattttatcatgcccctgatcattgtgat-------cgttgaga |
1936432 |
T |
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| Q |
104 |
tagcaaaagaatccctcagagtt--tatgtaagccaggtacattttgttcca |
153 |
Q |
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| T |
1936431 |
tagaaaatgaatccctcagagttaatatataatccaggtacattctgttcca |
1936380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 1930682 - 1930616
Alignment:
| Q |
104 |
tagcaaaagaatccctcagagtttatgtaagccaggtacattttgttccaaatttatataatgcctt |
170 |
Q |
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| T |
1930682 |
tagcaaaagaatccctcagagtttaaggtagccaggtacattttgttccagatttaattaatgcctt |
1930616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 1940037 - 1939979
Alignment:
| Q |
16 |
tttgcttcaaatctatcacaatacattatatagcgaacaaatcatattttatcatgccc |
74 |
Q |
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| T |
1940037 |
tttgcatcaaatctttcaaaatacattgtgaagcgaacgaatcatattttatcatgccc |
1939979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 990024 - 990093
Alignment:
| Q |
4 |
aatttcataatatttgcttcaaatctatcacaatacattatatagcgaacaaatcatattttatcatgcc |
73 |
Q |
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| T |
990024 |
aatttcacaatgtttgcttcaaatctttaacaatatattatgaagtgaaccaatcaaattttatcatgcc |
990093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 50774543 - 50774599
Alignment:
| Q |
2 |
caaatttcataatatttgcttcaaatctatcacaatacattatatagcgaacaaatca |
59 |
Q |
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| T |
50774543 |
caaatttcataatatttgcttcaagtctttcataa-acattatgaagcgaacaaatca |
50774599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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