View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0288_low_27 (Length: 202)
Name: NF0288_low_27
Description: NF0288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0288_low_27 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 76; Significance: 2e-35; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 123 - 202
Target Start/End: Complemental strand, 26828685 - 26828606
Alignment:
| Q |
123 |
ctacacaagttgtgtctcagaaaatctgatccttatctgatttactctttccgtacggattggtgaaaacctcgtcctcc |
202 |
Q |
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| T |
26828685 |
ctacacaagttgtgtctcagaaaatctgatccttatctgatttactctttccgtatggattggtgaaaacctcgtcctcc |
26828606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 26640984 - 26640914
Alignment:
| Q |
123 |
ctacacaagttgtgtctcagaaaatctgat--ccttatctgatttactctttccgtacggattggtgaaaa |
191 |
Q |
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| T |
26640984 |
ctacacaagttctgtctcagaaactctgatatccttatctgatttactctctctgtaaggattgatgaaaa |
26640914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 26746950 - 26746880
Alignment:
| Q |
123 |
ctacacaagttgtgtctcagaaaatctgat--ccttatctgatttactctttccgtacggattggtgaaaa |
191 |
Q |
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||||||||||| ||||||||||| |||||| |||||||||||||||||| || ||| |||||| |||||| |
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| T |
26746950 |
ctacacaagttctgtctcagaaactctgatatccttatctgatttactctctctgtaaggattgatgaaaa |
26746880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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