View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0288_low_4 (Length: 585)
Name: NF0288_low_4
Description: NF0288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0288_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 108 - 436
Target Start/End: Complemental strand, 49274763 - 49274431
Alignment:
| Q |
108 |
atatgtttgttttctagcattgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggttggtcatttgggtaaactt |
207 |
Q |
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||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49274763 |
atatgttggttttctagctttgcctatgactagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggttggtcatttgggtaaactt |
49274664 |
T |
|
| Q |
208 |
tctctttctagcacagctattgct----atctctctttgtgctgtctctggcttcagccgttcagcgttcttgcaagtcttcttttgccatattaggctt |
303 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49274663 |
tctctttctagcacagctattgcttgctatctctctttgtgctgtctctggcttcagccgttcagcgttcttgcaagtcttcttttgccatattaggctt |
49274564 |
T |
|
| Q |
304 |
atctcttaactatgcatgctattgagtttaagagctactgttgtatcatttgcagagtaagcagtcatttgggtccctgcacatgtcatactgtatctct |
403 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49274563 |
atctcttaactatgcatgctattgattttaagagctactgttgtatcatttgcagagtaagcagtcatttgggtccctgcacatgtcatactgtatctct |
49274464 |
T |
|
| Q |
404 |
atactatttgaatgcatcagaattataaaaaat |
436 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
49274463 |
atactatttgaatgcatcagaattataaaaaat |
49274431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 110 - 260
Target Start/End: Original strand, 49254815 - 49254965
Alignment:
| Q |
110 |
atgtttgttttctagcattgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggttggtcatttgggtaaactttc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49254815 |
atgtttgttttctagcattgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggttggtcatttgggtaaactttc |
49254914 |
T |
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| Q |
210 |
tctttctagcacagctattgctatctctctttgtgctgtctctggcttcag |
260 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
49254915 |
tctttctagcacagctattgctatctctctctgtgttgtctctggcttcag |
49254965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 110 - 260
Target Start/End: Original strand, 49271483 - 49271633
Alignment:
| Q |
110 |
atgtttgttttctagcattgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggttggtcatttgggtaaactttc |
209 |
Q |
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||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
49271483 |
atgttggttttctagctttgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggttggtcatttgggtaaacttgc |
49271582 |
T |
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| Q |
210 |
tctttctagcacagctattgctatctctctttgtgctgtctctggcttcag |
260 |
Q |
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|||||||| ||||||||||||||||||||| | || ||||||||||||||| |
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| T |
49271583 |
tctttctaccacagctattgctatctctctctatggtgtctctggcttcag |
49271633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 110 - 260
Target Start/End: Original strand, 49267077 - 49267227
Alignment:
| Q |
110 |
atgtttgttttctagcattgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggttggtcatttgggtaaactttc |
209 |
Q |
| |
|
|||||||||||||||| |||||||||| || ||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| | |
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| T |
49267077 |
atgtttgttttctagctctgcctatgatcgccgtcactctgtcacaatattttctacaaattatttcaatgataatggttggtcgtttgggtaaacttgc |
49267176 |
T |
|
| Q |
210 |
tctttctagcacagctattgctatctctctttgtgctgtctctggcttcag |
260 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
49267177 |
tctttctagcacagctattgctatctctctctgtggtgtctctggcttcag |
49267227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 5e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 429 - 563
Target Start/End: Complemental strand, 53637029 - 53636895
Alignment:
| Q |
429 |
taaaaaatggcacccaaaatgtgagctcctcctccgtattaaaccggaggaagacagcggagcacgttcgtgtttgggtctcaaatatggcgcgcttcat |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53637029 |
taaaaaatggcacccaaaatgtgagctcctcctccgtattaaaccggaggaagacagcggagcacgttcgtgtttgggtctcaaatatggcgcgcttcat |
53636930 |
T |
|
| Q |
529 |
aacgaagttcccgagcttctcaaggcagctgacat |
563 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
53636929 |
aacgaagttcccgagcttctcaaggcagctgacat |
53636895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 430 - 560
Target Start/End: Complemental strand, 53651363 - 53651233
Alignment:
| Q |
430 |
aaaaaatggcacccaaaatgtgagctcctcctccgtattaaaccggaggaagacagcggagcacgttcgtgtttgggtctcaaatatggcgcgcttcata |
529 |
Q |
| |
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||||||||||| |||||||| |||||||||||||||||||| |||| |||| ||| ||||| ||| | | |||| || ||||||| || |||||||| | |
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| T |
53651363 |
aaaaaatggcatccaaaatgcgagctcctcctccgtattaagacggatgaaggcagtggagcgcgtgcatctttgagtgtcaaatacggtgcgcttcaca |
53651264 |
T |
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| Q |
530 |
acgaagttcccgagcttctcaaggcagctga |
560 |
Q |
| |
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| ||||||| ||||||||||| || ||||| |
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| T |
53651263 |
atgaagttcttgagcttctcaaagctgctga |
53651233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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