View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0288_low_5 (Length: 468)
Name: NF0288_low_5
Description: NF0288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0288_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 39 - 453
Target Start/End: Original strand, 4112782 - 4113185
Alignment:
| Q |
39 |
ctagagagaaattacaaaaatacctttggcttgatttgnnnnnnnnctttctaactggcccactcaatctcttcatttcctctgttagataactaaactt |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||| ||||||| || |||| |||||||||||||||| |
|
|
| T |
4112782 |
ctagagagaaattacaaaaatacctttggcttgatttgttttt----tttccaactggcccacccaacctcttcactttctctattagataactaaactt |
4112877 |
T |
|
| Q |
139 |
ctcattctcctcttactctttcattattttctcattctcttgtttgttgttatcgtttgttgatcgttgataatttatgcatatgtcataccactttgtc |
238 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
4112878 |
ctcattctcttcttactctttcattattttctcattctcttgtttgttgttatcgtttgttgatcgttggtaatttatgcatatgtcatgccactttgtc |
4112977 |
T |
|
| Q |
239 |
aattatgtttattgaattgttcttttttattgcaaatgcnnnnnnnnnnnnaataccgtagttcaatctatgttgcatactttagttcaatttttcttca |
338 |
Q |
| |
|
| | |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4112978 |
agt---gtttattgaattgttcttttttgttgcaaatgcttttttttt---aataccgtagttcaatctatgttgcatactttagttcaatttttcttca |
4113071 |
T |
|
| Q |
339 |
ttttagaagtagtttatgtttaacttatgcatataagaagacttattttttcaacttatgcatattgtagtttatgtttaactacaatagtttttcttta |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4113072 |
ttttagaagtagtttatgtttaacttatgcatataataaggctt-ttttttcaacttatgcatattgtagtttatgtttaactacaaaagtttttcttta |
4113170 |
T |
|
| Q |
439 |
tacttgttagtttct |
453 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
4113171 |
tacttgttagtttct |
4113185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 91 - 206
Target Start/End: Original strand, 29753371 - 29753486
Alignment:
| Q |
91 |
aactggcccactcaatctcttcatttcctctgttagataactaaacttctcattctcctcttactctttcattattttctcattctcttgtttgttgtta |
190 |
Q |
| |
|
|||||||||| ||| ||||||| |||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29753371 |
aactggcccatccaacctcttcacctcctctgttagataactaaatttctcattctcttctcactctttcattattttctcattctcttgtttgttgtta |
29753470 |
T |
|
| Q |
191 |
tcgtttgttgatcgtt |
206 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
29753471 |
ttgtttgttgatcgtt |
29753486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 312 - 453
Target Start/End: Original strand, 29753718 - 29753865
Alignment:
| Q |
312 |
tgcatactttagttcaatttttcttcattttagaagtagtttatgtttaacttatgcatataagaagacttatt--------ttttcaacttatgcatat |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||| || |||||||||||||||||| |
|
|
| T |
29753718 |
tgcatactttagttcaatttttcttcattttagaactagtttatgtttaacttatgcatataacaaggcttttttttctttcttttcaacttatgcatat |
29753817 |
T |
|
| Q |
404 |
tgtagtttatgtttaactacaatagtttttctttatacttgttagtttct |
453 |
Q |
| |
|
|||||||||||||||||| | | |||||| ||||||||||||||||| |
|
|
| T |
29753818 |
--tagtttatgtttaactacgaaggcttttctctatacttgttagtttct |
29753865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 4915740 - 4915802
Alignment:
| Q |
85 |
ctttctaactggcccactcaatctcttcatttcctctgttagataactaaacttctcattctc |
147 |
Q |
| |
|
||||| |||||| ||| ||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4915740 |
ctttccaactggttcacccaacctcttcacttcctctgttagataactaaacttctcattctc |
4915802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 91 - 201
Target Start/End: Complemental strand, 49420902 - 49420791
Alignment:
| Q |
91 |
aactggcccactcaatctcttcatttcctctgttagataactaaacttctcattctcctcttactctttc-attattttctcattctcttgtttgttgtt |
189 |
Q |
| |
|
||||||||||| ||| ||||||| |||||||| |||||||||||| | |||||||| ||| ||||| || ||| |||||||||| |||||||||||||| |
|
|
| T |
49420902 |
aactggcccacccaacctcttcacttcctctggtagataactaaaatgttcattctcttctcactctctcaattcttttctcattatcttgtttgttgtt |
49420803 |
T |
|
| Q |
190 |
atcgtttgttga |
201 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
49420802 |
attgtttgttga |
49420791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 386 - 453
Target Start/End: Complemental strand, 3776881 - 3776814
Alignment:
| Q |
386 |
ttttcaacttatgcatattgtagtttatgtttaactacaatagtttttctttatacttgttagtttct |
453 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| | | |||||||||||||||||||||||| |
|
|
| T |
3776881 |
ttttcaactaatgcatattgtagtttatgtttaactacgaaggcttttctttatacttgttagtttct |
3776814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 3777231 - 3777182
Alignment:
| Q |
153 |
actctttcattattttctcattctcttgtttgttgttatcgtttgttgat |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3777231 |
actctttcattattttctcattctcttgtttgttgttattgtttgttgat |
3777182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 292 times since January 2019
Visitors: 2564