View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0288_low_8 (Length: 408)
Name: NF0288_low_8
Description: NF0288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0288_low_8 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 41 - 408
Target Start/End: Original strand, 31144114 - 31144482
Alignment:
| Q |
41 |
aaaggaaacttaggttgaatagaaaatataggctggatcagtcc-ttaatacatgtattttttgttttatnnnnnnnttgattttttctttgttctggtt |
139 |
Q |
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| T |
31144114 |
aaaggaaacttaggttgaatagaaaatataggctggatcagtcccttaatacatgtattttttgttttataaaaaaattgattttttctttgttctggtc |
31144213 |
T |
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| Q |
140 |
gtggaggggtagattattttattgggcctcttaactattctatgattttttgttgttgaattattcacatttttaatgaattggaaaatatttggcatat |
239 |
Q |
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| T |
31144214 |
gtggaggggtagattattttattgggcctcttaactattctatgattttttgttgttgaattattcacatttttaatgagttggaaaatatttggcatat |
31144313 |
T |
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| Q |
240 |
acaacatggttaagcagaatatttgagtcaaacctctttctcaactcttcaactactcatgaaactttggaaatgaaaagtatgctgcaaaacaaaatat |
339 |
Q |
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| T |
31144314 |
acaacatggttaagcagaatatttgagtcaaacctctttctcaactcttcaactactcatgaaactttggaaatgaaaagtatgctgcaaaacaaaatat |
31144413 |
T |
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| Q |
340 |
tttgccctgttgcactcaaccattctatagttctacctctaattagtaatttcagcacataataagcat |
408 |
Q |
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| T |
31144414 |
tttgccctgttgcactcaaccattctatagttctacctctaattagtaatttcagcacataataagcat |
31144482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 120 - 231
Target Start/End: Complemental strand, 31186358 - 31186247
Alignment:
| Q |
120 |
attttttctttgttctggttgtggaggggtagattattttattgggcctcttaactattctatgattttttgttgttgaattattcacatttttaatgaa |
219 |
Q |
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| T |
31186358 |
attttttctttgttctggttgtggaggggtagattattttagtgggtctcttaactattctatgaatttttggtgtagaattattcacatttttaatgag |
31186259 |
T |
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| Q |
220 |
ttggaaaatatt |
231 |
Q |
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| T |
31186258 |
ttggaaaatatt |
31186247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 31186806 - 31186737
Alignment:
| Q |
41 |
aaaggaaacttaggttgaatagaaaatataggctggatcagtc-cttaatacatgtattttttgttttat |
109 |
Q |
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| T |
31186806 |
aaaggaaacttaggttgaatagaaaatataggctggatcagtcacttaatacatgtattttttgtattat |
31186737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 407
Target Start/End: Original strand, 1929650 - 1929746
Alignment:
| Q |
310 |
aaatgaaaagtatgctgcaaaaca-aaatattttgccctgttgcactcaaccattctatagttctacctctaattagtaatttcagcacataataagca |
407 |
Q |
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| T |
1929650 |
aaatgaaaagtatgctgcataacacaaatgattttctctgttgcattcaaccattctg--gttctaccattaattagcaatttcggcacataataagca |
1929746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 400
Target Start/End: Original strand, 1935868 - 1935957
Alignment:
| Q |
311 |
aatgaaaagtatgctgcaaaacaaaa--tattttgccctgttgcactcaaccattctatagttctacctctaattagtaatttcagcacata |
400 |
Q |
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|||||||||||||||||| ||||||| |||| |||||||||| |||||||||| | ||| |||| |||||||||||||| ||||||| |
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| T |
1935868 |
aatgaaaagtatgctgcataacaaaaatgatttgcccctgttgcattcaaccattc--tggttataccattaattagtaatttcggcacata |
1935957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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