View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0288_low_9 (Length: 408)

Name: NF0288_low_9
Description: NF0288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0288_low_9
NF0288_low_9
[»] chr8 (2 HSPs)
chr8 (13-313)||(34812926-34813227)
chr8 (133-187)||(39332586-39332640)
[»] chr4 (1 HSPs)
chr4 (13-85)||(5892866-5892938)
[»] chr3 (3 HSPs)
chr3 (13-84)||(28580403-28580474)
chr3 (24-84)||(28575354-28575414)
chr3 (25-84)||(28586547-28586606)
[»] chr6 (1 HSPs)
chr6 (13-84)||(24072023-24072094)
[»] scaffold1033 (1 HSPs)
scaffold1033 (13-84)||(3034-3110)
[»] scaffold1029 (1 HSPs)
scaffold1029 (13-84)||(3034-3110)
[»] chr1 (1 HSPs)
chr1 (132-184)||(17322705-17322757)


Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 313
Target Start/End: Original strand, 34812926 - 34813227
Alignment:
Q  13 aatatctccacctataaacaccgaatcaagtctgttttattatcaaagcattaattttcagaatggttagtacctagtacttagtagtactacttgacta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34812926 aatatctccacctataaacaccgaatcaagtctgttttattatcaaagcattaattttcagaatggttagtacctagtacttagtagtactacttgacta 34813025  T
Q  113 taannnnnnnnn-gaggtgaaccttggggagatccagttccatagagcggtttgcatagcccaaggtccggccctggcaggtagtgtactggtagagagt 211  Q
    |||          ||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||    
T  34813026 taattttttttttgaggtgaaccttggggagacccagttccatagagcggtttgcataccctaaggtccggccctggcagatagtgtactggtagagagt 34813125  T
Q  212 ctagcaacaatcttttttggtcatgatgagttcaaatcctgtttgtgcctcaaacaatgcagagcacaaacagttaattactaatgcgttgcctcatgtt 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||    
T  34813126 ctagcaacaatcttttttggtcatgatgagttcaaatcctgtttgtgcctcaaataatgcagagcacaaaaagttaattactaatgtgttgcctcatgtt 34813225  T
Q  312 cc 313  Q
    ||    
T  34813226 cc 34813227  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 39332586 - 39332640
Alignment:
Q  133 ccttggggagatccagttccatagagcggtttgcatagcccaaggtccggccctg 187  Q
    |||||||||  ||||||||||| |||||||||||| | ||||||||||| |||||    
T  39332586 ccttggggatgtccagttccattgagcggtttgcacatcccaaggtccgaccctg 39332640  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 5892938 - 5892866
Alignment:
Q  13 aatatctccacctataaacaccgaatcaagtctgttttattatcaaagcattaattttcagaatggttagtac 85  Q
    ||||| |||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  5892938 aatatttccacctataaacaccaaatcaagtctgttttattatcagagcactaattttcagaatggttagtac 5892866  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 28580474 - 28580403
Alignment:
Q  13 aatatctccacctataaacaccgaatcaagtctgttttattatcaaagcattaattttcagaatggttagta 84  Q
    |||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  28580474 aatatccccagctataaacactgaatcaagtctgttttattatcaaagcattaatttccagaatggtaagta 28580403  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 28575414 - 28575354
Alignment:
Q  24 ctataaacaccgaatcaagtctgttttattatcaaagcattaattttcagaatggttagta 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||    
T  28575414 ctataaacaccgaatcaagtctgttttattatcaaagcattaatttctagaatggtaagta 28575354  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 28586606 - 28586547
Alignment:
Q  25 tataaacaccgaatcaagtctgttttattatcaaagcattaattttcagaatggttagta 84  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| ||||    
T  28586606 tataaacactgaatcaagtctgttttactatcaaagcattaatttccagaatggtaagta 28586547  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 24072094 - 24072023
Alignment:
Q  13 aatatctccacctataaacaccgaatcaagtctgttttattatcaaagcattaattttcagaatggttagta 84  Q
    |||||||||| |||||||||  ||||||||||||||||| ||||||||||||||||| ||||||||| ||||    
T  24072094 aatatctccaactataaacattgaatcaagtctgttttactatcaaagcattaatttccagaatggtaagta 24072023  T

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Target: scaffold1033 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 3034 - 3110
Alignment:
Q  13 aatatctccacctataaacaccgaatcaagtctgttttatt-----atcaaagcattaattttcagaatggttagta 84  Q
    |||||| ||| |||||||||| ||||||||||||||||| |     |||||||||||||||| ||||||||| ||||    
T  3034 aatatccccagctataaacactgaatcaagtctgttttaatttactatcaaagcattaatttccagaatggtaagta 3110  T

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Target: scaffold1029 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 3034 - 3110
Alignment:
Q  13 aatatctccacctataaacaccgaatcaagtctgttttatt-----atcaaagcattaattttcagaatggttagta 84  Q
    |||||| ||| |||||||||| ||||||||||||||||| |     |||||||||||||||| ||||||||| ||||    
T  3034 aatatccccagctataaacactgaatcaagtctgttttaatttactatcaaagcattaatttccagaatggtaagta 3110  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 17322705 - 17322757
Alignment:
Q  132 accttggggagatccagttccatagagcggtttgcatagcccaaggtccggcc 184  Q
    |||||||||||| || ||||||| |||||||||||| | || |||||||||||    
T  17322705 accttggggagaccccgttccattgagcggtttgcacaccctaaggtccggcc 17322757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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