View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0290-Insertion-1 (Length: 790)

Name: NF0290-Insertion-1
Description: NF0290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0290-Insertion-1
NF0290-Insertion-1
[»] chr3 (1 HSPs)
chr3 (49-790)||(52778859-52779600)


Alignment Details
Target: chr3 (Bit Score: 643; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 49 - 790
Target Start/End: Complemental strand, 52779600 - 52778859
Alignment:
Q  49 acattccatgttgattttcatattgtcaaactcatacaacaagagtagtattaagggaatttatatttgtggattgtggtgtgcgcatattgcttagtac 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52779600 acattccatgttgattttcatattgtcaaactcatacaacaagagtagtattaagggaatttatatttgtggattgtggtgtgcgcatattgcttagtac 52779501  T
Q  149 acatgcaaggattttatagtagggggaaggtaagactgcaagcgtgagggtggacacaagtggttgtattaaaatcnnnnnnnnttgttaaaagtttgaa 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||    
T  52779500 acatgcaaggattttatagtagggggaaggtaagactgcaagcgtgagggtggacacaagtggttgtattaaaatcaaaaaaatttgttaaaagtttgaa 52779401  T
Q  249 aataaatggagaaaacgttttgttatgactataagacaaaagtggtccatttgaatnnnnnnnnnngtgggaaaaatggtccattctggttgtctttgcg 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||    
T  52779400 aataaatggagaaaacgttttgttatgactataagacaaaagtggtccatttgaataaaaaaaaa-gtgggaaaaatggtccattctggttgtctttgcg 52779302  T
Q  349 aactgtgagcgtataattccatttagtaattgtaattttattttgaaaatttgtcgttttttgccattctaatacatatgtgatatgtgttcatattagt 448  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52779301 aactgtgagcgtataattccatttagtaattgtaattttattttgaaaatttgtcgttttttgccattctaatacatatgtgatatgtgttcatattagt 52779202  T
Q  449 agatttttagtcaagcgttaagagatatgttcggatataatgtatgacaatgtctttgcatgtaattatttcatgtcgaaagaatctataaaagaaaatt 548  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52779201 agatttttagtcaagcgttaagagatatgttcggatataatgtctgacaatgtctttgcatgtaattatttcatgtcgaaagaatctataaaagaaaatt 52779102  T
Q  549 gtgttcgtaaaaaataaagactaaacctacatgttaattatgcaacttgaattttagtc-nnnnnnnttaggcaacttgagttttagggtttaattggga 647  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  52779101 gtgttcgtaaaaaataaagactaaacctacatgttaattatgcaacttgaattttagtcaaaaaaaattaggcaacttgagttttagggtttaattggga 52779002  T
Q  648 gtttagaggaaagtagaatagggagcactttgtaggagggggaggaaggaaacgaaaagagaactcctcaattcttttttagtgttttcgaatgtaatga 747  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52779001 gtttagacgaaagtagaatagggagcactttgtaggagggggaggaaggaaacgaaaagagaactcctcaattcttttttagtgttttcgaatgtaatga 52778902  T
Q  748 aaatacttattaataatattaaacttttatcttttctacaata 790  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  52778901 aaatacttattaataatattaaactattatcttttctacaata 52778859  T

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