View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0290-Insertion-12 (Length: 1070)
Name: NF0290-Insertion-12
Description: NF0290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0290-Insertion-12 |
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Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 188 - 860
Target Start/End: Original strand, 9910516 - 9911187
Alignment:
| Q |
188 |
ttaagacatataattatttgcagatgatcttcataatatgaacgacgatgcaagctctcaaagctcaacgaattccttcaagtctttcaattaccattgc |
287 |
Q |
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| T |
9910516 |
ttaagacatagaactatttgcagatgatcttcaatatatgaacgacgatgcaagctctcaaagctcaacgaattccttcaagtctttcaattaccattgc |
9910615 |
T |
|
| Q |
288 |
a------------atgaagatgaccaaggtacaaatctagtagtaggagaagaacctctttgttgcaatccaaagagtcacaacaaatggacaagatttg |
375 |
Q |
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| T |
9910616 |
aatgattcatgcaatgaagatgaccaaggtacaaatcaagtagtaggagaagaacctctttgttgcaatccgaagagtcacaacaaatggacaagatttg |
9910715 |
T |
|
| Q |
376 |
gtcctccagaagagatggtggaggctggtttcaccaaacagttttgtaacaagagaatggattctcacactcatactcataggaatcatcatggtcaaag |
475 |
Q |
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| T |
9910716 |
gtcctccagaagagatggtggaggctggtttcaccaaacagttttgtaacaagagaatggattctcacactcacactcataggaatcatcatggtcaaag |
9910815 |
T |
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| Q |
476 |
acatggatgtcaaagacttacaaggattaattcatgtgttgatgtgaggaaacaacaactacaacgatcattgatggaggagatgcaaaagataaggatg |
575 |
Q |
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| T |
9910816 |
acatggatgtcaaagacttacaaggattaattcatgtgttgatgtgaggaaacaacaactacaacgatcattgatggaggagatgcaaaagataaggatg |
9910915 |
T |
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| Q |
576 |
ttcaacacagttggtgccattgagaatgttgggtttcaaaatccagatgaaggtggatggnnnnnnncttgaattcaagctccatggatttagattatac |
675 |
Q |
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| T |
9910916 |
ttcaacacagttggtgccattgagaatgttgggtttcaaaatccagatgaaggtggatggttttcttcttgaattcaagctccatggattttgattatac |
9911015 |
T |
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| Q |
676 |
tattttcatatttcactgagtttggagtgtttattaatttgatgtcttgcattatattgtaaaataattgtaatatattttgtagaaaagtgctctaatg |
775 |
Q |
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| T |
9911016 |
cattttcttattttactgcgtttggagtgtttattaaattgatgtcttgcattat-----------attgtaatatattttgttgaaaagtgctctaatg |
9911104 |
T |
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| Q |
776 |
ttgtaccnnnnnnnttattgttctaatgtacttcaatattgtaaataacaaatgtgatacatgtttttgtagaaaggtgctctaa |
860 |
Q |
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| T |
9911105 |
ttgtaccaaataaagaattttactaatgaatttcaataatgtaaataac-aatgtgatacctg-ttttatagaaaagtgctctaa |
9911187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 2e-83
Query Start/End: Original strand, 8 - 185
Target Start/End: Original strand, 9910277 - 9910454
Alignment:
| Q |
8 |
attgataaatgggcatgttgcttgggtggaaattgttgagtatggctcaacggtaaaattttaaataggatcgtcgtatttatgcacaagttttattctg |
107 |
Q |
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| T |
9910277 |
attgataaatgggcatgttgctcgggtggaaattgttaagtatggctcaacggtaaaattttaaataggatcgtcgtatttatgcacaacttttattctg |
9910376 |
T |
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| Q |
108 |
tagaatactaaacaccttaatcggacatcatgtgttctttgtttgcgttttttgtatctttaattttgaacaagaatt |
185 |
Q |
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| T |
9910377 |
tagaatactaaacaccttaatcgaacatcatgtgttctttgtttgcgttttttgtatctttaattttgaaccagaatt |
9910454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 860 - 973
Target Start/End: Original strand, 9911549 - 9911664
Alignment:
| Q |
860 |
aatgaaataaattgtttcgtttttgagccattcattccttact--aaatcattataaaacatgttgaaataaggatgaaagtataaggaactcataattg |
957 |
Q |
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| T |
9911549 |
aatgaaataaattgtttattttttgagcccttcattcctttctccaaatcactatagaatatgttgaaataaggataaaggtataaggaattgataattg |
9911648 |
T |
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| Q |
958 |
atctaactttccaata |
973 |
Q |
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| T |
9911649 |
atctagctttccaata |
9911664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 9910155 - 9910231
Alignment:
| Q |
8 |
attgataaatgggcatgttgcttgggtggaaattgttgagtatggctcaacggtaaaattttaaataggatcgtcgt |
84 |
Q |
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| T |
9910155 |
attgatgaatgggcatgttggtcgggtggaaattgttgagtatggctcaacggtaaacttgtaaattggatcgtcgt |
9910231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 31592882 - 31592919
Alignment:
| Q |
132 |
acatcatgtgttctttgtttgcgttttttgtatcttta |
169 |
Q |
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| T |
31592882 |
acatcatgtgttcattgtttgtgttttttgtatcttta |
31592919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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