View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0290-Insertion-13 (Length: 1035)
Name: NF0290-Insertion-13
Description: NF0290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0290-Insertion-13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 829; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 829; E-Value: 0
Query Start/End: Original strand, 9 - 1020
Target Start/End: Complemental strand, 48222742 - 48221732
Alignment:
| Q |
9 |
atcaaacaatggttgcaagagtttgagcatagacataaaaaattgccaaaagaaaggcatcaaaatcatactttcaattggtggtggtgtcaatggttac |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48222742 |
atcaaacaatggttgcaagagtttgagcatagacataaaaaattgccaaaagaaaggcatcaaaatcatactttcaattggtggtggtgtcaatggttac |
48222643 |
T |
|
| Q |
109 |
tctttatcatccaatgaagatgctagaaacgttggagattacatattgaacaatttcttaggagggacatcaaaatcaagaccattaggtgatgttgtgt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48222642 |
tctttatcatccaatgaagatgctagaaacgttggagattacatattgaacaatttcttaggagggacatcaaaatcaagaccattaggtgatgttgtgt |
48222543 |
T |
|
| Q |
209 |
tggatggtgtagattttgacattgaagttggtggtggtgaagttttttatagtgagcttgcaagaagactgtctcaacatagagggaccaaaaa-gtgta |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
48222542 |
tggatggtgtagattttgacattgaagttggtggtggtgaagttttttatagtgagcttgcaagaagactgtctcaacatagagggaccaaaaaagtgta |
48222443 |
T |
|
| Q |
308 |
cttaacagctgcacctcaatgtccttttcctgatcaatatctcaaaggagcattatcaacaggactatttgactatgtttgggttcaattttacaacaat |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48222442 |
cttaacagctgcacctcaatgtccttttcctgatcaacatctcaaaggagcattatcaacaggactatttgactatgtttgggttcaattttacaacaat |
48222343 |
T |
|
| Q |
408 |
ggtccttgtcaaattgaagctagtaacctcaacaagttccaaaaatcttggaatcaatgggtttcgactattaaggttagtaagatttatgttggagttc |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48222342 |
ggtccttgtcaaattgaagctagtaacctcaacaagttccaaaaatcttggaatcaatgggtttcgactattaaggttagtaagatttatgttggagttc |
48222243 |
T |
|
| Q |
508 |
ctgcctcaccatcagctgctactgctagtagtggttatgtgccaacacaggtacttataagtaaagtgttgccttttgttaaaagatcaagaaagtatgg |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48222242 |
ctgcctcaccatcagctgctactgctagtagtggttatgtgccaacacaggtacttataagtaaagtgttgccttttgttaaaagatcaagaaagtatgg |
48222143 |
T |
|
| Q |
608 |
aggtgtgatgctttgggataggtttgctgataagcaaaatggatactctagggacattaaggcatctgtttgagattttctttactttggttaatttgta |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48222142 |
aggtgtgatgctttgggataggtttgctgataagcaaaatggatactctagggacattaaggcatctgtttgagattttctttactttggttaatttgta |
48222043 |
T |
|
| Q |
708 |
ttgtatccatgaataaatgcaagtcgttgtaatgagtttggactgttgagtcaagttaataaag--ttttatttcacttaattcaacattgatcttgttc |
805 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
48222042 |
ttgtatccataaataaatgcaagtcgttgtaatgagtttggactgttgagtcaagttaataaagttttttatttcacttaattcaacattgatcttgttc |
48221943 |
T |
|
| Q |
806 |
catttatgtgtgacatttatttgtgatagctaaatgttaatatactctttgtgtggctctctttatgtactgtttttgatagactacttcttttttgtgg |
905 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||| ||||||||||||| ||||| | ||||| || ||||||||| |
|
|
| T |
48221942 |
catttatgtgtgacatttttttgtgatagctaaatgttaata---tcttt-tgtggct-tctttatgtactg-ttttgttggacta--tcctttttgtgg |
48221851 |
T |
|
| Q |
906 |
tgtcaaagttattaagaacttt-attgtgcag----nnnnnnnnatcgtgccagcatgtattcaaaaagaagcca-catatgcttag-attctgctcatt |
998 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||| |||||||||||||| |||||||||| ||||| ||||||||||| |||||||||||| |
|
|
| T |
48221850 |
tgtc-aagttatt-agaactttaattgtgcagttttttttttttatcgtgccagcatgcattcaaaaag-agccaccatatgcttagaattctgctcatt |
48221754 |
T |
|
| Q |
999 |
acccacatcattcctaaagtaa |
1020 |
Q |
| |
|
||||| |||||||| ||||||| |
|
|
| T |
48221753 |
acccaaatcattcccaaagtaa |
48221732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 366 - 407
Target Start/End: Original strand, 47980378 - 47980419
Alignment:
| Q |
366 |
acaggactatttgactatgtttgggttcaattttacaacaat |
407 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||||||||| |
|
|
| T |
47980378 |
acaggtctttttgactatgtttgggtgcaattttacaacaat |
47980419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 249
Target Start/End: Complemental strand, 17571073 - 17570980
Alignment:
| Q |
156 |
gaacaatttcttaggagggacatcaaaatcaagaccattaggtgatgttgtgttggatggtgtagattttgacattgaagttggtggtggtgaa |
249 |
Q |
| |
|
|||||||||||| || || |||||| ||||||||||||||||||| ||| |||||||| | |||||||| ||||||| ||||| ||||||| |
|
|
| T |
17571073 |
gaacaatttcttgggtggcacatcatcttcaagaccattaggtgatgctgttttggatggaattgattttgatattgaagctggtgatggtgaa |
17570980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 44817231 - 44817321
Alignment:
| Q |
156 |
gaacaatttcttaggagggacatcaaaatcaagaccattaggtgatgttgtgttggatggtgtagattttgacattgaagttggtggtggt |
246 |
Q |
| |
|
|||||||||||| || || |||||| ||||||||||||||||||| ||| |||||||| | |||||||| ||||||| ||||| |||| |
|
|
| T |
44817231 |
gaacaatttcttgggtggcacatcatcttcaagaccattaggtgatgctgttttggatggaattgattttgatattgaagctggtgatggt |
44817321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 44849179 - 44849235
Alignment:
| Q |
184 |
tcaagaccattaggtgatgttgtgttggatggtgtagattttgacattgaagttggt |
240 |
Q |
| |
|
||||||||||| ||||||| |||||| ||||| ||||||||||||||||| ||||| |
|
|
| T |
44849179 |
tcaagaccatttggtgatgctgtgttagatggcatagattttgacattgaaattggt |
44849235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 369 - 403
Target Start/End: Original strand, 8139403 - 8139437
Alignment:
| Q |
369 |
ggactatttgactatgtttgggttcaattttacaa |
403 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8139403 |
ggactttttgactatgtttgggttcaattttacaa |
8139437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 309 times since January 2019
Visitors: 2564