View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0290-Insertion-2 (Length: 487)
Name: NF0290-Insertion-2
Description: NF0290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0290-Insertion-2 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 6 - 487
Target Start/End: Original strand, 2701556 - 2702044
Alignment:
| Q |
6 |
cattttaaacaaaaaagggaaaagaatcgtagtcagctgcaacaaactagtttccacttcacaaaacctctttactagcattttaaatatagtaagctat |
105 |
Q |
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| T |
2701556 |
cattttaaacaaaaaaggtagaagaatcgtagtcagctgcaacaaactagtttccacttcacaaaacctctttactagcattttaaatatagtaagctat |
2701655 |
T |
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| Q |
106 |
cagtaaattattaagaaatcgattatttttactagcattttaaattaaacaaaa------gtagaagaatcgtagtcggctgcagcaaactagtttccac |
199 |
Q |
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| T |
2701656 |
cattaaatttttaagaaatcgattatttttactagcattttaaataaaaaaaaaaaaaaagtagaagaatcatagtcggctgcagcaaactagtttccac |
2701755 |
T |
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| Q |
200 |
ttcacaaaacctttttaccagcattttaaatatcgtaaactgtcgataaatttttaatgactcgattcttttaacacattttaaacaaaa-aaggtagaa |
298 |
Q |
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| T |
2701756 |
ttcacaaaacctttttaccagcattttaaatatcgtaagctgtcagtaaatttttaatgaatcgattctttttacgcattttaaacaaaaaaaggtagaa |
2701855 |
T |
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| Q |
299 |
aaatcgtaggtaccatcaacaaactagtttccagttcacaaaaccttttttcatactcacttttttctcttatcgttgttatttttcacaagtattcctg |
398 |
Q |
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| T |
2701856 |
aaatcgtaggtagcagcaacaaactagtttccacttcacaaaaccttttttcatactcacttttttctcttatcgttgttatttttcacaagtattcctg |
2701955 |
T |
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| Q |
399 |
caaatattattcactctctgggatttctcctttctcttgtatctcttactcaacctcatcttcatctttcttcaattttcacccaattg |
487 |
Q |
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| T |
2701956 |
caaatatttttcgctccctgggatttctcctttctcttgtatctcttactcaacctcatcttcatctttcttcaattttcacccaattg |
2702044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 35 - 256
Target Start/End: Original strand, 2701451 - 2701669
Alignment:
| Q |
35 |
tagtcagctgcaacaaactagtttccacttcacaaaacctctttactagcattttaaatatagtaagctatcagtaaattattaagaaatcgattatttt |
134 |
Q |
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| T |
2701451 |
tagtcagctgcaacaaactaatttccacttcacaaaacctttttactaatattttaaatatagta-----tcactaaacttttaagaagttgattctttt |
2701545 |
T |
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| Q |
135 |
ta----ctagcattttaaattaaacaaaagtagaagaatcgtagtcggctgcagcaaactagtttccacttcacaaaacctttttaccagcattttaaat |
230 |
Q |
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| T |
2701546 |
taattactagcattttaaacaaaa--aaggtagaagaatcgtagtcagctgcaacaaactagtttccacttcacaaaacctctttactagcattttaaat |
2701643 |
T |
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| Q |
231 |
atcgtaaactgtcgataaatttttaa |
256 |
Q |
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| T |
2701644 |
atagtaagctatcattaaatttttaa |
2701669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 90 - 344
Target Start/End: Original strand, 2701375 - 2701624
Alignment:
| Q |
90 |
aaatatagtaagctatcagtaaattattaagaaatcgattattttt-actagcattttaaattaaacaaaagtagaagaatcgtagtcggctgcagcaaa |
188 |
Q |
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| T |
2701375 |
aaatatagtaagctatcagtaagtt-ttaagaaatcgattctttttaactagcattttaa---caaaaaaggtagaagaa---tagtcagctgcaacaaa |
2701467 |
T |
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| Q |
189 |
ctagtttccacttcacaaaacctttttaccagcattttaaatatcgtaaactgtcgataaatttttaatgactcgattcttttaa------cacatttta |
282 |
Q |
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| T |
2701468 |
ctaatttccacttcacaaaacctttttactaatattttaaatatagta-----tcactaaacttttaagaagttgattctttttaattactagcatttta |
2701562 |
T |
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| Q |
283 |
aacaaaaaaggtagaaaaatcgtaggtaccatcaacaaactagtttccagttcacaaaacct |
344 |
Q |
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| T |
2701563 |
aacaaaaaaggtagaagaatcgtagtcagctgcaacaaactagtttccacttcacaaaacct |
2701624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 483
Target Start/End: Original strand, 10850945 - 10850995
Alignment:
| Q |
433 |
tcttgtatctcttactcaacctcatcttcatctttcttcaattttcaccca |
483 |
Q |
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| T |
10850945 |
tcttttatctcctactcaacctcttcttcgtctttcttcaatcttcaccca |
10850995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 483
Target Start/End: Original strand, 10878459 - 10878509
Alignment:
| Q |
433 |
tcttgtatctcttactcaacctcatcttcatctttcttcaattttcaccca |
483 |
Q |
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| T |
10878459 |
tcttttatctcctactcaacctcttcttcgtctttcttcaatcttcaccca |
10878509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 480
Target Start/End: Complemental strand, 16723995 - 16723943
Alignment:
| Q |
428 |
ctttctcttgtatctcttactcaacctcatcttcatctttcttcaattttcac |
480 |
Q |
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| T |
16723995 |
ctttctcatttatctcctactcaacctcttcttcatgtttcttcaatattcac |
16723943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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