View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0290-Insertion-4 (Length: 412)

Name: NF0290-Insertion-4
Description: NF0290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0290-Insertion-4
NF0290-Insertion-4
[»] chr8 (5 HSPs)
chr8 (8-412)||(17083356-17083762)
chr8 (21-95)||(15326700-15326774)
chr8 (21-95)||(15507069-15507143)
chr8 (8-95)||(6094625-6094712)
chr8 (8-92)||(28548552-28548636)
[»] chr6 (9 HSPs)
chr6 (8-95)||(17684087-17684174)
chr6 (8-95)||(11652225-11652312)
chr6 (8-95)||(17691058-17691145)
chr6 (8-95)||(27380870-27380957)
chr6 (8-95)||(27471253-27471340)
chr6 (8-95)||(29309392-29309479)
chr6 (8-95)||(29316351-29316438)
chr6 (21-95)||(27297131-27297205)
chr6 (8-95)||(25536809-25536896)
[»] scaffold0390 (1 HSPs)
scaffold0390 (8-95)||(6552-6639)
[»] scaffold0234 (2 HSPs)
scaffold0234 (8-95)||(1939-2026)
scaffold0234 (8-95)||(10830-10917)
[»] chr7 (7 HSPs)
chr7 (8-95)||(12751328-12751415)
chr7 (8-95)||(15152945-15153032)
chr7 (8-95)||(11535680-11535767)
chr7 (8-95)||(11542598-11542685)
chr7 (8-95)||(12739038-12739125)
chr7 (8-95)||(18561500-18561587)
chr7 (8-95)||(29328286-29328373)
[»] chr4 (14 HSPs)
chr4 (8-95)||(869099-869186)
chr4 (8-95)||(5707822-5707909)
chr4 (8-95)||(5714450-5714537)
chr4 (8-95)||(8858669-8858756)
chr4 (8-95)||(10620951-10621038)
chr4 (8-95)||(10628030-10628117)
chr4 (8-95)||(18262714-18262801)
chr4 (8-95)||(18269575-18269662)
chr4 (8-95)||(28392752-28392839)
chr4 (8-95)||(55613185-55613272)
chr4 (21-95)||(26964142-26964216)
chr4 (21-95)||(26970965-26971039)
chr4 (8-95)||(19926378-19926465)
chr4 (23-95)||(35224062-35224134)
[»] chr3 (13 HSPs)
chr3 (8-95)||(8490997-8491084)
chr3 (8-95)||(10572210-10572297)
chr3 (8-95)||(10578974-10579061)
chr3 (8-95)||(13211804-13211891)
chr3 (8-95)||(13249109-13249196)
chr3 (8-95)||(13517309-13517396)
chr3 (8-95)||(15341837-15341924)
chr3 (8-95)||(15600502-15600589)
chr3 (8-95)||(15607047-15607134)
chr3 (8-95)||(16482101-16482188)
chr3 (8-95)||(32056517-32056604)
chr3 (8-95)||(15357204-15357291)
chr3 (21-95)||(17780749-17780823)
[»] chr2 (2 HSPs)
chr2 (8-95)||(21329866-21329953)
chr2 (8-95)||(22791476-22791563)
[»] chr1 (3 HSPs)
chr1 (8-95)||(18252532-18252619)
chr1 (8-95)||(18532132-18532219)
chr1 (7-95)||(27131027-27131115)
[»] scaffold0433 (1 HSPs)
scaffold0433 (8-95)||(7609-7696)
[»] scaffold0220 (1 HSPs)
scaffold0220 (8-95)||(18789-18876)
[»] scaffold0186 (1 HSPs)
scaffold0186 (8-95)||(25608-25695)
[»] scaffold0008 (1 HSPs)
scaffold0008 (7-90)||(230008-230091)
[»] scaffold0063 (1 HSPs)
scaffold0063 (21-95)||(6024-6098)
[»] chr5 (3 HSPs)
chr5 (8-94)||(19714116-19714202)
chr5 (22-94)||(19706851-19706923)
chr5 (23-95)||(28719388-28719460)


Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 8 - 412
Target Start/End: Complemental strand, 17083762 - 17083356
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtcagtatactaagac 107  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  17083762 catacaccatgtcatccctgtctagtttaatattgaacccatagacatttttgctgttatgtaagaagcacaaattccatctaggtcagtatactaagac 17083663  T
Q  108 cctccatttccgccattaccaacacccttctagcttttttcttgccaccaaagtttgtgttacccgaaataaccatatttatgttccttacatggactat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17083662 cctccatttccgccattaccaacacccttctagcttttttcttgccaccaaagtttgtgttacccgaaataactatatttatgttccttacatggactat 17083563  T
Q  208 aatcgatg--ctttcgttatctatgctcagaatcagaaattgctgggtttaaaaattggactctgccacagttggatctatattagattcctagcaaaga 305  Q
    ||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17083562 aatcgatgtgctttcattatctatgctcagaatcagaaattgctgggtttaaaaattggactctgccacagttggatctatattagattcctagcaaaga 17083463  T
Q  306 aacatttaggaagcactataaatctttgtcttacattcaagttaaggttaaaacaattggatgctatattgtttatcaaatttcaatgaccctgcaaacc 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17083462 aacatttaggaagcactataaatctttgtcttacattcaagttaaggtcaaaacaattggatgctatattgtttatcaaatttcaatgaccctgcaaacc 17083363  T
Q  406 tattgta 412  Q
    |||||||    
T  17083362 tattgta 17083356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 15326774 - 15326700
Alignment:
Q  21 atccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  15326774 atccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 15326700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 15507143 - 15507069
Alignment:
Q  21 atccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  15507143 atccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 15507069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 6094712 - 6094625
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | ||||||||||||| |||||    
T  6094712 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatcttggtca 6094625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 28548636 - 28548552
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctagg 92  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| |  || |||||| || | ||||||||||||||||    
T  28548636 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcatgttatgtaggaggggcaaattccatctagg 28548552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 17684087 - 17684174
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||||||||||||| | ||| |||||| || | |||||||||||||||||||    
T  17684087 catagaccgtgtcatccttgtctagttcaatattgggcccatagacatttctcctgttatgtaggaggggcaaattccatctaggtca 17684174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 11652312 - 11652225
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  11652312 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 11652225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 17691058 - 17691145
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  17691058 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 17691145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 27380870 - 27380957
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  27380870 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 27380957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 27471253 - 27471340
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  27471253 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 27471340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 29309479 - 29309392
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  29309479 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 29309392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 29316438 - 29316351
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  29316438 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 29316351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 27297205 - 27297131
Alignment:
Q  21 atccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  27297205 atccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 27297131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 25536809 - 25536896
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  | | ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  25536809 catagaccgtgtcatccttgtctagttcaatattgggcacgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 25536896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 6552 - 6639
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||||||||||||| | ||| |||||| || |  ||||||||||||||||||    
T  6552 catagaccgtgtcatccttgtctagttcaatattgggcccatagacatttctcctgttatgtaggagggacaaattccatctaggtca 6639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 1939 - 2026
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  1939 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 2026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 10830 - 10917
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  10830 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 10917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 12751415 - 12751328
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  12751415 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 12751328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 15153032 - 15152945
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  15153032 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 15152945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 11535680 - 11535767
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | | |||||||||||||||||    
T  11535680 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggaaaattccatctaggtca 11535767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 11542598 - 11542685
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| ||||||||| |||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  11542598 catagaccgtgtcatccttgtcaagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 11542685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 12739125 - 12739038
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || |  ||||||||||||||||||    
T  12739125 catagaccgtgtcatccttgtctagttcaatattggtcccgtagacatttctcctgttatgtaggagggccaaattccatctaggtca 12739038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 18561587 - 18561500
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | ||||||||| |||||||||    
T  18561587 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttcttctgttatgtaggaggggcaaattccctctaggtca 18561500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 29328373 - 29328286
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||| ||||||||||||||    
T  29328373 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaagttccatctaggtca 29328286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 869186 - 869099
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  869186 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggagcaaattccatctaggtca 869099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 5707909 - 5707822
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  5707909 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 5707822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 5714537 - 5714450
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  5714537 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 5714450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 8858756 - 8858669
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  8858756 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 8858669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 10620951 - 10621038
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  10620951 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 10621038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 10628030 - 10628117
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  10628030 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 10628117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 18262801 - 18262714
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  18262801 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 18262714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 18269662 - 18269575
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  18269662 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 18269575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 28392752 - 28392839
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  28392752 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 28392839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 55613272 - 55613185
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  55613272 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 55613185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 26964216 - 26964142
Alignment:
Q  21 atccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  26964216 atccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 26964142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 26971039 - 26970965
Alignment:
Q  21 atccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  26971039 atccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 26970965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 19926378 - 19926465
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| |||| |||| | ||| |||||| || | |||||||||||||||||||    
T  19926378 catagaccgtgtcatccttgtctagttcaatattgggcccgtagatatttctcctgttatgtaggaggggcaaattccatctaggtca 19926465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 35224134 - 35224062
Alignment:
Q  23 ccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||||||||||| |||||||  ||| ||||||||| | ||  |||||| || | |||||||||||||||||||    
T  35224134 ccttgtctagttcaatattgggcccgtagacatttctcctattatgtaggaggggcaaattccatctaggtca 35224062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 8491084 - 8490997
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  8491084 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 8490997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 10572210 - 10572297
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  10572210 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggagcaaattccatctaggtca 10572297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 10578974 - 10579061
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  10578974 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 10579061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 13211891 - 13211804
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  13211891 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 13211804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 13249196 - 13249109
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  13249196 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 13249109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 13517396 - 13517309
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  13517396 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 13517309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 15341837 - 15341924
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| |||| | |||||||||||||||||    
T  15341837 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaagggtaaattccatctaggtca 15341924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 15600502 - 15600589
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  15600502 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 15600589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 15607047 - 15607134
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  15607047 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 15607134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 16482101 - 16482188
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  16482101 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 16482188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 32056517 - 32056604
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  32056517 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 32056604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 15357204 - 15357291
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | | |||||||||||||||||    
T  15357204 cataaaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggtaaattccatctaggtca 15357291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 17780749 - 17780823
Alignment:
Q  21 atccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| ||   |||||||||||||||||||    
T  17780749 atccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggagaggcaaattccatctaggtca 17780823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 21329866 - 21329953
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  21329866 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 21329953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 22791476 - 22791563
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| |||||| || | ||| |||||| || | |||||||||||||||||||    
T  22791476 catagaccgtgtcatccttgtctagttcaatattggtcccgtagacaattctcctgttatgtaggaggggcaaattccatctaggtca 22791563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 18252619 - 18252532
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  18252619 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 18252532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 18532132 - 18532219
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  18532132 catagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 18532219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 27131027 - 27131115
Alignment:
Q  7 acatacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    ||||| ||| ||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | ||||||| |||||||||||    
T  27131027 acatagaccgtgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattacatctaggtca 27131115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 7696 - 7609
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||||||| |||||||  ||  ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  7696 catagaccgtgtcatccttgtctagttcaatattgggcctgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 7609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 18876 - 18789
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||| ||| |||||||||| ||| |||||||  ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  18876 catagaccgtgtcatccttgtctcgttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 18789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 25608 - 25695
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||| ||||||| |||||||||||||| |||||||  ||| ||||||||| | ||| || ||| || | || ||||||||||||||||    
T  25608 catagaccatgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttacgtaggaggggcgaattccatctaggtca 25695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 230008 - 230091
Alignment:
Q  7 acatacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatcta 90  Q
    ||||| ||||||| |||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | || |||||||||||    
T  230008 acataaaccatgtcatccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcgaattccatcta 230091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 6098 - 6024
Alignment:
Q  21 atccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||||||||||||| ||||||   ||| ||||||||| | ||| |||||| || | |||||||||||||||||||    
T  6098 atccttgtctagttgaatatttggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtca 6024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 19714116 - 19714202
Alignment:
Q  8 catacaccatgtgatccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtc 94  Q
    |||| ||| ||| |||||||| ||||| |||||||  ||| ||||||||| | ||| |||||| || | ||||||||||||||||||    
T  19714116 catagaccgtgtcatccttgtatagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaattccatctaggtc 19714202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 19706851 - 19706923
Alignment:
Q  22 tccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtc 94  Q
    ||||||||||||| |||||||  ||| ||||||||| | ||| |||||| || | ||||||| ||||||||||    
T  19706851 tccttgtctagttcaatattgggcccgtagacatttctcctgttatgtaggaggggcaaatttcatctaggtc 19706923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 28719388 - 28719460
Alignment:
Q  23 ccttgtctagtttaatattgaacccatagacatttttgctgatatgtaagaagcgcaaattccatctaggtca 95  Q
    |||||||||||||||||||| |||| | ||||||| |  || |||||| |||| | ||||| |||||||||||    
T  28719388 ccttgtctagtttaatattggacccgttgacatttctcttgttatgtaggaagggaaaatttcatctaggtca 28719460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 253 times since January 2019
Visitors: 2563