View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0290-Insertion-5 (Length: 1072)
Name: NF0290-Insertion-5
Description: NF0290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0290-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 845; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 845; E-Value: 0
Query Start/End: Original strand, 7 - 1004
Target Start/End: Original strand, 41077566 - 41078560
Alignment:
| Q |
7 |
agaggtgtcaatggcagtaataaacccaggttgtgaagtaacctttcaattgatatagccgagacatttcataccggcaaggattgaattggcttgtctt |
106 |
Q |
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| T |
41077566 |
agaggtgtcaatggcagtaataaacccaggttgtgaagtaacctttcgattgatatagccgagacatttcataccggcaaggattgaattggcttgtctt |
41077665 |
T |
|
| Q |
107 |
tgccaagtatgaaattggaagcggaaagcttgatagctatgtgagcactgagcaccatgttgaagtggtgatagtttgaaccggaaggattgccacaatt |
206 |
Q |
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| T |
41077666 |
tgccaagtatgaaattggaagcggaaagcttgatagctatgtgagcactgagcaccatgttgaagtggtgatagtttgaaccggaaggattgccacaatt |
41077765 |
T |
|
| Q |
207 |
acttggtgtggtggatgtgtctatgatggtagccatgggttcaagaagtgagtcataatggagattataattccattttgctgcagcatcagtttagctg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41077766 |
acttggtgtggtggatgtgtctatgatggtagccatgggttcaagaagtgagtcataatggagattataattccattttgctgcagcatcagtttagctg |
41077865 |
T |
|
| Q |
307 |
ctctggtgacaatatctttttagtgcttagtaattagtattccttagttgtatttctggttttacttcataggttttgtatgcagaatcatgagatgtgt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41077866 |
ctctggtgacaatatctttttagtgcttagtaattagtattccttagttgtatttctggttttacttcataggttttgtatgcagaatcatgagatgtgt |
41077965 |
T |
|
| Q |
407 |
gcctatattgtattatgctatgctttaattgattctatgttttcatggatgtatactgaccccttttatgcatgtcttctannnnnnnngaac-----tt |
501 |
Q |
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| T |
41077966 |
gcctatattgtattatgctatgctttaattgattctatgttttcatggatgtatactgaccccttttatgcatgtcttcta-tttttttgaacttatgtt |
41078064 |
T |
|
| Q |
502 |
atgtgtattttcttagagattcattaagctaggactttatcctattagtttatgcttagaaaagtttgattgtaatattgatttttgtataggatttgat |
601 |
Q |
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| T |
41078065 |
atgtgtattttcttagagattcattaagctaggactttatcctattagttt-tgcttagaaaagtttgattgtaatattgatttttgtataggatttgat |
41078163 |
T |
|
| Q |
602 |
gtacgacattggttactttgaacatcacatgatatattattattatttgttccaaagatttaattttctgttctcaaaaaatatatttaaagtattattt |
701 |
Q |
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| T |
41078164 |
gtacgacattggttactttgaacatcatttgatatattattattatttgttccaaagatttaattttctgttctcaaaaaatatatttaaagtattattt |
41078263 |
T |
|
| Q |
702 |
cctttaatcacgaagnnnnnnnttgttatttggtcagatcataaagataaaattgtaaattagttttaaaatacctctcttttcatattttgaaccaaac |
801 |
Q |
| |
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|||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41078264 |
cctttaatcacgcagaaaaaaattgttatttgatcagatcataaagataaaattgtaaattagttttaaaatatctctcttttcatattttgaaccaaac |
41078363 |
T |
|
| Q |
802 |
acatttgtaattaaacttttttcattccacttccctctcctcccctatagaccctaaatggaggctaaatagagtgtagtgagtggttcagtttgaagca |
901 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41078364 |
acattt-taattaaacttttttcattccacttccctctcctcccctatagaccctaaatggaggctaaatagagtgtagtgagtggttcagtttgaagca |
41078462 |
T |
|
| Q |
902 |
aagggtggtggtggtggcagtgtgactgagaagaggagaaggtggagtatgtgagtacctaaaattaggagttacaggttcttagttgagcgcagtaaat |
1001 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||| ||||||||| | ||| ||||||| |
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| T |
41078463 |
aagggtggtggtggtggcagtgtgactgag-agaggagaaggt-gagtatgtgagtacctaaaatta-gagttaca-gttcttagtggggcg-agtaaat |
41078557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 395 - 445
Target Start/End: Original strand, 1217178 - 1217228
Alignment:
| Q |
395 |
catgagatgtgtgcctatattgtattatgctatgctttaattgattctatg |
445 |
Q |
| |
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|||||||||||||| | ||| ||||||||||||||||||||||||||||| |
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|
| T |
1217178 |
catgagatgtgtgcttgaattttattatgctatgctttaattgattctatg |
1217228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 395 - 452
Target Start/End: Complemental strand, 4132091 - 4132034
Alignment:
| Q |
395 |
catgagatgtgtgcctatattgtattatgctatgctttaattgattctatgttttcat |
452 |
Q |
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|||||||| ||||| | |||||||| |||||||||||||| ||||||||||| |||| |
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| T |
4132091 |
catgagatatgtgcttgaattgtattgtgctatgctttaatcgattctatgttatcat |
4132034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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