View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0290-Insertion-6 (Length: 1040)
Name: NF0290-Insertion-6
Description: NF0290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0290-Insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 782; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 782; E-Value: 0
Query Start/End: Original strand, 8 - 935
Target Start/End: Original strand, 10005295 - 10006223
Alignment:
| Q |
8 |
tcttaaagtgcgagaagcaggatattgttgctttatccattaggcaaactatcaagctaggaatcttgctacatgtgagcttatttggttgcagcaactt |
107 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10005295 |
tcttaaagtgcgagaagcaggatattattgctttatccattaggcaaactatcaagctaggaatcttgctacatgtgagcttatttggttgcagcaactt |
10005394 |
T |
|
| Q |
108 |
ctatgcgagttaaggaatggaaaattggagcccgtgagtatgaaatgtgataatcagacagccttacatattgccctcaatccggtcttcttttataaaa |
207 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10005395 |
ctatgcgagttaaggaattgaaaattggagcccgtgagtatgaaatgtgataatcagacagccttacatattgccctcaatccggtcttcttttataaaa |
10005494 |
T |
|
| Q |
208 |
ctaaacacgtaaaagattgcttgtcattttctctgcgagaagatctttttaggcgaggacgttacacctattttgaattccaatggtgagccagtggata |
307 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10005495 |
ctaaacacataaaagattgcttgtcattttctctgcgagaagatctttttaggcgaggacgttacacctattttgaattccaatggtgagccagtggata |
10005594 |
T |
|
| Q |
308 |
ttttcaccaattcacaggcccaaggataacttatatatgctaagatttacacatgtcatatatgcaccagcttgaggagtgttatattgcttttttatcc |
407 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10005595 |
ctttcaccaattcacaggcccaaggataacttacatatgctaaggtttacacatgtcatatatgcaccagcttgaggagtgttatattgcttttttatcc |
10005694 |
T |
|
| Q |
408 |
ttccttgtgactatttttctgatgcaactattaattacgataagttagaaagtctgtagcttgtaattactaagttacttgattaaatgcctataatcaa |
507 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10005695 |
ttccttgtaactatttttctgatgcaactattaattacgataagttagaaagtctgtagcttgtaattactaagttacttgattaaatgcctataatcaa |
10005794 |
T |
|
| Q |
508 |
cggattccaattgtacacttataaattcataaccctgatagttaatctctcaagaaactcggtatcaaattcatttccannnnnnnnnnattgaaattca |
607 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10005795 |
cggattccaattgtacacttataaattcataacgctgatagttaatctctcaagaaactcggtatcaaattcatttccattttttttttattgaaattca |
10005894 |
T |
|
| Q |
608 |
acctcattctcgtattcaaatgtcaataacaacaatcacgaaaaaactatctacgctaaagataagagaaactcttgtgaagaaaactaagcgtgcaaaa |
707 |
Q |
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| T |
10005895 |
acctcattctcgtattcaaatgtcaataacaacaatcacgaaaaaactatctacgctaaagataagagaaactcttgtgaagaaaactaagcgtgcaaaa |
10005994 |
T |
|
| Q |
708 |
caaaacttaacaaatcattttttcttcttattaaagaagaataaccaacaatnnnnnnnnctcctacagacnnnnnnnnttaagcacattcacaacaata |
807 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||| |
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| T |
10005995 |
caaaacttaacaaatcattttttcttcttattaaagaagaataaccaacaataaaaaaaactcct--agacaaaaaaaattaagcacattcacaacaata |
10006092 |
T |
|
| Q |
808 |
cccttttatgatatttattattggctaatctcatttcaattgtctgctagcactgatgaagggcattatagaaacaatggc-ataagtacagtgaaggtg |
906 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
10006093 |
cccttttatgatatttattattggctaatctcatttcaattgtctgctagcactgatgaagggcattatagaaacaatggcaataaatacagtgaaggtg |
10006192 |
T |
|
| Q |
907 |
attg-agattgcttatatt-gagagtaaaaa |
935 |
Q |
| |
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|||| |||||||||||||| ||||||||||| |
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|
| T |
10006193 |
attgaagattgcttatattggagagtaaaaa |
10006223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 7e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 501 - 645
Target Start/End: Original strand, 48192834 - 48192985
Alignment:
| Q |
501 |
taatcaacggattccaattgtaca-------cttataaattcataaccctgatagttaatctctcaagaaactcggtatcaaattcatttccannnnnnn |
593 |
Q |
| |
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||||||| |||||||||||||||| ||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
48192834 |
taatcaatggattccaattgtacagttatagcttataaatgaataacactgatagtcaatctctcaagaaactcggtatcaaattcattttcatatttct |
48192933 |
T |
|
| Q |
594 |
nnnattgaaattcaacctcattctcgtattcaaatgtcaataacaacaatca |
645 |
Q |
| |
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||||||||||| ||||||||| ||||||| | ||||||||||||||| |
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| T |
48192934 |
tttattgaaattcagtctcattctcacattcaaaagacaataacaacaatca |
48192985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 788 - 826
Target Start/End: Complemental strand, 5665339 - 5665301
Alignment:
| Q |
788 |
taagcacattcacaacaatacccttttatgatatttatt |
826 |
Q |
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||||||||||||||| ||||||||||||||| ||||||| |
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| T |
5665339 |
taagcacattcacaaaaatacccttttatgagatttatt |
5665301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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