View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0290-Insertion-7 (Length: 343)
Name: NF0290-Insertion-7
Description: NF0290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0290-Insertion-7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 8 - 343
Target Start/End: Complemental strand, 40919883 - 40919548
Alignment:
| Q |
8 |
atgtgtgatgaacatgggatagatccttcaggaagttatgtaggaaagtcacaccttcaagttgagagagtgaatgtgtactacaatgaagcaagtggtg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40919883 |
atgtgtgatgaacatgggatagatccttcaggaagttatgtaggaaagtcacaccttcaacttgagagagtgaatgtgtactacaatgaagcaagtggtg |
40919784 |
T |
|
| Q |
108 |
gaagatatgttcctagagctgttctaatggaccttgaaccaggtaccatggacagtttacgttctggtccatttggaaaaatatttaggcctgataactt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40919783 |
gaagatatgttcctagagctgttctaatggaccttgaaccaggtaccatggacagtttacgttctggtccatttggaaaaatatttaggcctgataactt |
40919684 |
T |
|
| Q |
208 |
tgtgtttggacaaaatggagctggtaataattgggctaaaggacattacactgaaggagctgaacttattgattctgttcttgatgttgttcgaaaagaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40919683 |
tgtgtttggacaaaatggagctggtaataattgggctaaaggacattacactgaaggagctgaacttattgattctgttcttgatgttgttcgaaaagaa |
40919584 |
T |
|
| Q |
308 |
gctgagaattgcgactgcttgcaaggtacttcctta |
343 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
40919583 |
gctgagaattgcgactgcttgcaaggtacttcctta |
40919548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 81 - 335
Target Start/End: Original strand, 5530570 - 5530824
Alignment:
| Q |
81 |
atgtgtactacaatgaagcaagtggtggaagatatgttcctagagctgttctaatggaccttgaaccaggtaccatggacagtttacgttctggtccatt |
180 |
Q |
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| T |
5530570 |
atgtgtattacaatgaagcaagtggtggaagatttgttccgagagcggttcttatggatcttgaaccgggtactatggatagtatccggtctggaccgta |
5530669 |
T |
|
| Q |
181 |
tggaaaaatatttaggcctgataactttgtgtttggacaaaatggagctggtaataattgggctaaaggacattacactgaaggagctgaacttattgat |
280 |
Q |
| |
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||| | || ||||| || ||||| ||||||||||| || | ||| ||||| ||||| ||||||||||| ||||| |||||||| ||||| ||||||||| |
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| T |
5530670 |
tggtcagatctttagaccggataattttgtgtttggtcagagtggtgctgggaataactgggctaaagggcattatactgaaggcgctgagcttattgat |
5530769 |
T |
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| Q |
281 |
tctgttcttgatgttgttcgaaaagaagctgagaattgcgactgcttgcaaggta |
335 |
Q |
| |
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|||||||||||||||||| | ||||||||||||||||| || |||||||| |||| |
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| T |
5530770 |
tctgttcttgatgttgttaggaaagaagctgagaattgtgattgcttgcagggta |
5530824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 80 - 312
Target Start/End: Complemental strand, 5936642 - 5936410
Alignment:
| Q |
80 |
aatgtgtactacaatgaagcaagtggtggaagatatgttcctagagctgttctaatggaccttgaaccaggtaccatggacagtttacgttctggtccat |
179 |
Q |
| |
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|||||||| ||||||||||||||||||||||| | ||||||||||| ||||| ||||| |||||||| || || ||||||||| | || ||||| || | |
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| T |
5936642 |
aatgtgtattacaatgaagcaagtggtggaaggttcgttcctagagcggttcttatggatcttgaaccgggaacgatggacagtgtccggtctggaccgt |
5936543 |
T |
|
| Q |
180 |
ttggaaaaatatttaggcctgataactttgtgtttggacaaaatggagctggtaataattgggctaaaggacattacactgaaggagctgaacttattga |
279 |
Q |
| |
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|| | || ||||| || ||||||||||| |||||||| | ||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |
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| T |
5936542 |
acggtcagatctttagaccggataactttgtctttggacagagtggtgctggtaataactgggctaaaggacattacactgaaggcgctgagcttattga |
5936443 |
T |
|
| Q |
280 |
ttctgttcttgatgttgttcgaaaagaagctga |
312 |
Q |
| |
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| T |
5936442 |
ttctgttcttgatgttgttaggaaagaagctga |
5936410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 191 - 335
Target Start/End: Complemental strand, 5923122 - 5922978
Alignment:
| Q |
191 |
tttaggcctgataactttgtgtttggacaaaatggagctggtaataattgggctaaaggacattacactgaaggagctgaacttattgattctgttcttg |
290 |
Q |
| |
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||||| || ||||||||||||||||| || | ||| ||||||||||| ||||||||||| ||||| |||||||| ||||| ||||||||||||||||||| |
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| T |
5923122 |
tttagaccggataactttgtgtttggtcagagtggtgctggtaataactgggctaaagggcattatactgaaggcgctgagcttattgattctgttcttg |
5923023 |
T |
|
| Q |
291 |
atgttgttcgaaaagaagctgagaattgcgactgcttgcaaggta |
335 |
Q |
| |
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|||||||| | ||||||||||||||||| || |||||||| |||| |
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| T |
5923022 |
atgttgttaggaaagaagctgagaattgtgattgcttgcagggta |
5922978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 335
Target Start/End: Complemental strand, 38178879 - 38178777
Alignment:
| Q |
233 |
aataattgggctaaaggacattacactgaaggagctgaacttattgattctgttcttgatgttgttcgaaaagaagctgagaattgcgactgcttgcaag |
332 |
Q |
| |
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||||||||||| ||||| |||||||| ||||| ||||| | |||||||| ||| | |||||||| | ||||| |||||||||||||| |||||||||| |
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| T |
38178879 |
aataattgggcgaaaggtcattacaccgaaggcgctgagttgattgattccgttttggatgttgtgaggaaagaggctgagaattgcgattgcttgcaag |
38178780 |
T |
|
| Q |
333 |
gta |
335 |
Q |
| |
|
||| |
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|
| T |
38178779 |
gta |
38178777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 80 - 335
Target Start/End: Complemental strand, 53148385 - 53148130
Alignment:
| Q |
80 |
aatgtgtactacaatgaagcaagtggtggaagatatgttcctagagctgttctaatggaccttgaaccaggtaccatggacagtttacgttctggtccat |
179 |
Q |
| |
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|||||||| ||||||||||| ||||||||| |||||||||||||| ||||| ||||| |||||||| ||||| ||||| ||| | | |||||||| | |
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| T |
53148385 |
aatgtgtattacaatgaagcttctggtggaaggtatgttcctagagcagttcttatggatcttgaacctggtactatggaaagtatcagatctggtccgt |
53148286 |
T |
|
| Q |
180 |
ttggaaaaatatttaggcctgataactttgtgtttggacaaaatggagctggtaataattgggctaaaggacattacactgaaggagctgaacttattga |
279 |
Q |
| |
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| || || || ||| | |||||||| || |||||||||||| ||| ||||||||||||||||| ||||| ||||| || ||||| ||||| | ||||| |
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| T |
53148285 |
tcggtaagatctttcgtcctgataatttcgtgtttggacaatctggtgctggtaataattgggccaaaggtcattataccgaaggtgctgagttgattga |
53148186 |
T |
|
| Q |
280 |
ttctgttcttgatgttgttcgaaaagaagctgagaattgcgactgcttgcaaggta |
335 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| || ||||||||||||| |
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|
| T |
53148185 |
ctctgttcttgatgttgttcgtaaagaagcagagaattgtgattgcttgcaaggta |
53148130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 80 - 335
Target Start/End: Complemental strand, 11734393 - 11734138
Alignment:
| Q |
80 |
aatgtgtactacaatgaagcaagtggtggaagatatgttcctagagctgttctaatggaccttgaaccaggtaccatggacagtttacgttctggtccat |
179 |
Q |
| |
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||||| || |||||||| |||||||||||||| |||||||| | |||||||| ||||| ||||| || ||||| ||||| | | || ||||| | |
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| T |
11734393 |
aatgtttattacaatgaggcaagtggtggaaggtatgttccacgcgctgttcttatggatcttgagcctggtactatggattccgttagatccggtccgt |
11734294 |
T |
|
| Q |
180 |
ttggaaaaatatttaggcctgataactttgtgtttggacaaaatggagctggtaataattgggctaaaggacattacactgaaggagctgaacttattga |
279 |
Q |
| |
|
|||| | || ||| | |||||||| |||||||| || || ||| ||||| ||||||||||||||||| ||||| || ||||| ||||| |||||||| |
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|
| T |
11734293 |
ttggtcagatctttcgtcctgataattttgtgttcggtcagtctggtgctgggaataattgggctaaaggtcattataccgaaggcgctgagcttattga |
11734194 |
T |
|
| Q |
280 |
ttctgttcttgatgttgttcgaaaagaagctgagaattgcgactgcttgcaaggta |
335 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| || ||||||||||||| |
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|
| T |
11734193 |
ttctgttcttgatgttgttcgtaaagaagctgagaattgtgattgcttgcaaggta |
11734138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 230 - 321
Target Start/End: Original strand, 34839859 - 34839950
Alignment:
| Q |
230 |
ggtaataattgggctaaaggacattacactgaaggagctgaacttattgattctgttcttgatgttgttcgaaaagaagctgagaattgcga |
321 |
Q |
| |
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||||| |||||||| ||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |
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| T |
34839859 |
ggtaacaattgggcgaaaggtcattacactgaaggcgctgaacttattgattcagttctcgatgttgttcgtaaagaagctgagaattgcga |
34839950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 318
Target Start/End: Complemental strand, 45454681 - 45454438
Alignment:
| Q |
75 |
gagtgaatgtgtactacaatgaagcaagtggtggaagatatgttcctagagctgttctaatggaccttgaaccaggtaccatggacagtttacgttctgg |
174 |
Q |
| |
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|||| |||||||||||||| ||||| ||| ||||||||| ||||||||||||||||| ||||| || || ||||| || ||||| || | | ||||| |
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| T |
45454681 |
gagtcaatgtgtactacaacgaagcgagttgtggaagattcgttcctagagctgttctcatggatctggagccagggactatggatagcgtcagatctgg |
45454582 |
T |
|
| Q |
175 |
tccatttggaaaaatatttaggcctgataactttgtgtttggacaaaatggagctggtaataattgggctaaaggacattacactgaaggagctgaactt |
274 |
Q |
| |
|
||||| || | || || |||||||||||||||| |||||||| || || || || || ||||| ||||| || || || ||||||||||| | |
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|
| T |
45454581 |
tccatacggtcagattttccggcctgataactttgtttttggacagtccggtgccggaaacaactgggcgaaaggtcactatacagaaggagctgagttg |
45454482 |
T |
|
| Q |
275 |
attgattctgttcttgatgttgttcgaaaagaagctgagaattg |
318 |
Q |
| |
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|||||||| || ||||||||||| | || || ||||||||||| |
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|
| T |
45454481 |
attgattcggtgcttgatgttgtcaggaaggaggctgagaattg |
45454438 |
T |
|
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