View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0290-Insertion-8 (Length: 179)
Name: NF0290-Insertion-8
Description: NF0290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0290-Insertion-8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 6 - 179
Target Start/End: Original strand, 44226588 - 44226761
Alignment:
| Q |
6 |
cagtctctgaaagaaaaacgaacgaaacgagcaaccaccgacgacaaaagaacaaccgcgaatccgcgattgtaaaacaaaaacataaaccttccaaaat |
105 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44226588 |
cagtctctgaaagaaaaacgaacgaaacgaccaaccgccgacgacaaaagaacaaccgcgaatccgcgattgtaaaacaaaaacacgaaccttccaaaat |
44226687 |
T |
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| Q |
106 |
ggtggaggccagctgcgagcataacccaccaacacatatatggatatgaacaagaaaacccaaactgaatgccg |
179 |
Q |
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| T |
44226688 |
ggtggaggcaatctgcgagcataacccaccaacacatatatggatatgaacaagaaaacccaaacagaatgccg |
44226761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 9 - 149
Target Start/End: Original strand, 2508677 - 2508807
Alignment:
| Q |
9 |
tctctgaaagaaaaacgaacgaaacgagcaaccaccgacgacaaaagaacaaccgcgaatccgcgattgtaaaacaaaaacataaaccttccaaaatggt |
108 |
Q |
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|||||||||||||||||||||||| |||||||| |||||| || |||||||||| |||||||||||||||||| ||||||||||||| ||| |
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| T |
2508677 |
tctctgaaagaaaaacgaacgaaaagagcaacctacgacgaagaaggaacaaccgc--------gattgtaaaacaaaaacacaaaccttccaaaacggt |
2508768 |
T |
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| Q |
109 |
ggaggccagctgcgagcataacccaccaacacatatatgga |
149 |
Q |
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|||||| |||| ||| ||||||||||||||||| |||| |
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| T |
2508769 |
ggaggcaagctatgag--aaacccaccaacacatatctgga |
2508807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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