View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0290-Insertion-9 (Length: 1122)

Name: NF0290-Insertion-9
Description: NF0290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0290-Insertion-9
NF0290-Insertion-9
[»] chr1 (12 HSPs)
chr1 (485-954)||(32803844-32804319)
chr1 (8-234)||(32803371-32803597)
chr1 (284-432)||(32803647-32803792)
chr1 (887-952)||(25395924-25395990)
chr1 (886-954)||(5346963-5347036)
chr1 (919-954)||(36618874-36618909)
chr1 (908-939)||(1609992-1610023)
chr1 (908-939)||(35489225-35489256)
chr1 (911-954)||(50302433-50302476)
chr1 (908-953)||(5368841-5368886)
chr1 (880-956)||(8900858-8900939)
chr1 (911-956)||(49166639-49166684)
[»] chr4 (5 HSPs)
chr4 (911-961)||(38562185-38562235)
chr4 (909-939)||(2198077-2198107)
chr4 (909-939)||(22720535-22720565)
chr4 (909-939)||(22720587-22720617)
chr4 (909-939)||(52673679-52673709)
[»] chr8 (7 HSPs)
chr8 (911-956)||(429830-429875)
chr8 (911-953)||(42158448-42158490)
chr8 (911-956)||(24185596-24185641)
chr8 (909-953)||(14113280-14113324)
chr8 (908-956)||(20694447-20694495)
chr8 (909-939)||(158456-158486)
chr8 (890-939)||(1157009-1157063)
[»] chr7 (6 HSPs)
chr7 (911-956)||(15996180-15996225)
chr7 (912-952)||(12810341-12810381)
chr7 (909-940)||(26982793-26982824)
chr7 (909-939)||(43250420-43250450)
chr7 (909-954)||(23097530-23097575)
chr7 (912-953)||(34670420-34670461)
[»] chr6 (5 HSPs)
chr6 (886-939)||(5069941-5069999)
chr6 (911-955)||(8051043-8051087)
chr6 (922-956)||(16260687-16260721)
chr6 (909-939)||(29938696-29938726)
chr6 (908-941)||(1158277-1158310)
[»] chr3 (6 HSPs)
chr3 (911-956)||(19790787-19790832)
chr3 (909-940)||(35239682-35239713)
chr3 (908-954)||(41067720-41067766)
chr3 (911-956)||(29212874-29212919)
chr3 (909-942)||(29497389-29497422)
chr3 (909-938)||(36344518-36344547)
[»] chr5 (5 HSPs)
chr5 (911-953)||(14509888-14509930)
chr5 (909-939)||(26221053-26221083)
chr5 (890-945)||(28499857-28499916)
chr5 (911-940)||(20269522-20269551)
chr5 (909-942)||(21032561-21032594)
[»] chr2 (1 HSPs)
chr2 (908-953)||(41517431-41517476)


Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 485 - 954
Target Start/End: Original strand, 32803844 - 32804319
Alignment:
Q  485 attctattggttacaagatagaagagataccaaacctttcagagactcaactcaagtaaaaagagagagaattaagaaataaaaatttagaacatagaca 584  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32803844 attctattggttacaagatagaagagataccaaacctttcagagactcaactcaagtaaaaagagagagaattaagaaataaaaatttagaacatagaca 32803943  T
Q  585 gtgagacaaagatgttataataatgaagtaatttgagaagaacacgaaactaactaactgtttgaggaggacaaattaaggagagaaaaagtgtttttga 684  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32803944 gtgagacaaagatgttataataatgaagtaatttgagaagaacacgaaactaactaactgtttgaggaggacaaattaaggagagaaaaagtgtttttga 32804043  T
Q  685 ataaattgatttcattactgttggtgtgagctgtgttgttgttgacatggggagataaaata-nnnnnnncttacttactttattgattttgtcgtttat 783  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  32804044 ataaattgatttcattactgttagtgtgagctgtgttgttgttgacatggggagataaaatatttgttttcttacttactttattgattttgtcgtttat 32804143  T
Q  784 tgata---------ttctatgataatcgagttatttgttaaaataaagtgtttcaaaatatttgattcatctcattttt-aatac-atattaattannnn 872  Q
    |||||         ||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||| ||||| ||||||||||        
T  32804144 tgatattccatacgttctatgataatcgagtcatttgttaaaataaagtgttccaaaatatttaattcatctcatttttcaatacaatattaatta-ttt 32804242  T
Q  873 nnnnnattattctctctgatcacatttataagg-aaaactttttagatacattgaataattaatgtattcaatcacatttata 954  Q
         |||| ||||||||||||||||||||||| ||||| ||||||||      ||||||||||||||||| |||||||||||    
T  32804243 tttttattactctctctgatcacatttataaggaaaaacattttagat------aataattaatgtattcagtcacatttata 32804319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 8 - 234
Target Start/End: Original strand, 32803371 - 32803597
Alignment:
Q  8 gtgttgtggtgtttgtttaaaccacttggggagtgggttcctgggtcaaccccagataaccctccttgaattgtccaccaaggattagccagaactgctg 107  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32803371 gtgttgtggtgtttgtttaaatcacttggggagtgggttcctgggtcaaccccagataaccctccttgaattgtccaccaaggattagccagaactgctg 32803470  T
Q  108 ttgtagtatttctacacttaagaagaagaagatgatgcttttgttgatgatattatgagaaaacaattgagcttgattagttttgtttgatttcagttgt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  32803471 ttgtagtatttctacacttaagaagaagaagatgatgcttttgttgatgatgttatgagaaaacaattgagcttgattagttttgtttgatttcagatgt 32803570  T
Q  208 ttgttttgatgtatgaaatatagggat 234  Q
    |||||||||||| ||||||||||||||    
T  32803571 ttgttttgatgtttgaaatatagggat 32803597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 135; E-Value: 9e-70
Query Start/End: Original strand, 284 - 432
Target Start/End: Original strand, 32803647 - 32803792
Alignment:
Q  284 ggatatgtatgtttatgatgacctaacatatgatgctcactcactaacttactcaaatggatgatgatagggtaaaggaaagtgatgaggtgcttagaag 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||    
T  32803647 ggatatgtatgtttatgatgacctaacatatgatgctcactcactaacttactcaaatggatgatgatagggtaaaggaaagtgat---gtgcttagaag 32803743  T
Q  384 agagaattagatgcaattattggatgagaatcaagtaaggggtttgatt 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32803744 agagaattagatgcaattattggatgagaatcaagtaaggggtttgatt 32803792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 887 - 952
Target Start/End: Original strand, 25395924 - 25395990
Alignment:
Q  887 tctgatcacatttataaggaaaa-ctttttagatacattgaataattaatgtattcaatcacattta 952  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||||||  ||||| |||||    
T  25395924 tctgatcacatttataagcaaaaactttttagatacattgaataattaatgtatctaatcatattta 25395990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 886 - 954
Target Start/End: Original strand, 5346963 - 5347036
Alignment:
Q  886 ctctgatcacatttataaggaaaa-----ctttttagatacattgaataattaatgtattcaatcacatttata 954  Q
    ||||| ||||||||||||| ||||     |||||||||||||||||||||||||||||| || |||||||||||    
T  5346963 ctctggtcacatttataagcaaaaaatgtctttttagatacattgaataattaatgtatccattcacatttata 5347036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 919 - 954
Target Start/End: Complemental strand, 36618909 - 36618874
Alignment:
Q  919 tacattgaataattaatgtattcaatcacatttata 954  Q
    ||||||||||||||||||||||||||||||||||||    
T  36618909 tacattgaataattaatgtattcaatcacatttata 36618874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 908 - 939
Target Start/End: Original strand, 1609992 - 1610023
Alignment:
Q  908 aactttttagatacattgaataattaatgtat 939  Q
    ||||||||||||||||||||||||||||||||    
T  1609992 aactttttagatacattgaataattaatgtat 1610023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 908 - 939
Target Start/End: Original strand, 35489225 - 35489256
Alignment:
Q  908 aactttttagatacattgaataattaatgtat 939  Q
    ||||||||||||||||||||||||||||||||    
T  35489225 aactttttagatacattgaataattaatgtat 35489256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 911 - 954
Target Start/End: Complemental strand, 50302476 - 50302433
Alignment:
Q  911 tttttagatacattgaataattaatgtattcaatcacatttata 954  Q
    |||| |||||||||||||||||||| |||||| |||||||||||    
T  50302476 ttttcagatacattgaataattaatatattcagtcacatttata 50302433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 908 - 953
Target Start/End: Complemental strand, 5368886 - 5368841
Alignment:
Q  908 aactttttagatacattgaataattaatgtattcaatcacatttat 953  Q
    |||||||||||| ||||||||||||||||||| |  ||||||||||    
T  5368886 aactttttagatgcattgaataattaatgtatccggtcacatttat 5368841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 880 - 956
Target Start/End: Complemental strand, 8900939 - 8900858
Alignment:
Q  880 tattctctctgatcacatttataaggaaaa-----ctttttagatacattgaataattaatgtattcaatcacatttatagg 956  Q
    ||||||||||| | ||||||||||| ||||     |||||||| || |||||||||||||||||| |  |||||||||||||    
T  8900939 tattctctctggtaacatttataagtaaaaaattactttttaggtatattgaataattaatgtatccggtcacatttatagg 8900858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 911 - 956
Target Start/End: Original strand, 49166639 - 49166684
Alignment:
Q  911 tttttagatacattgaataattaatgtattcaatcacatttatagg 956  Q
    ||||||| |||||| |||||||||||||| || |||||||||||||    
T  49166639 tttttaggtacattaaataattaatgtatccagtcacatttatagg 49166684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 911 - 961
Target Start/End: Complemental strand, 38562235 - 38562185
Alignment:
Q  911 tttttagatacattgaataattaatgtattcaatcacatttataggacata 961  Q
    ||||||||||||||||||||||||||||| |  ||||||||||||||||||    
T  38562235 tttttagatacattgaataattaatgtatccggtcacatttataggacata 38562185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 909 - 939
Target Start/End: Original strand, 2198077 - 2198107
Alignment:
Q  909 actttttagatacattgaataattaatgtat 939  Q
    |||||||||||||||||||||||||||||||    
T  2198077 actttttagatacattgaataattaatgtat 2198107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 909 - 939
Target Start/End: Original strand, 22720535 - 22720565
Alignment:
Q  909 actttttagatacattgaataattaatgtat 939  Q
    |||||||||||||||||||||||||||||||    
T  22720535 actttttagatacattgaataattaatgtat 22720565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 909 - 939
Target Start/End: Complemental strand, 22720617 - 22720587
Alignment:
Q  909 actttttagatacattgaataattaatgtat 939  Q
    |||||||||||||||||||||||||||||||    
T  22720617 actttttagatacattgaataattaatgtat 22720587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 909 - 939
Target Start/End: Complemental strand, 52673709 - 52673679
Alignment:
Q  909 actttttagatacattgaataattaatgtat 939  Q
    |||||||||||||||||||||||||||||||    
T  52673709 actttttagatacattgaataattaatgtat 52673679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000007; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 911 - 956
Target Start/End: Complemental strand, 429875 - 429830
Alignment:
Q  911 tttttagatacattgaataattaatgtattcaatcacatttatagg 956  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||    
T  429875 tttttagatacattgaataatcaatgtattcagtcacatttatagg 429830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 911 - 953
Target Start/End: Complemental strand, 42158490 - 42158448
Alignment:
Q  911 tttttagatacattgaataattaatgtattcaatcacatttat 953  Q
    ||||||||||||||||||||||||||||| || ||||||||||    
T  42158490 tttttagatacattgaataattaatgtatccagtcacatttat 42158448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 911 - 956
Target Start/End: Complemental strand, 24185641 - 24185596
Alignment:
Q  911 tttttagatacattgaataattaatgtattcaatcacatttatagg 956  Q
    ||||||| ||||||||||||||||||||| || |||||||||||||    
T  24185641 tttttaggtacattgaataattaatgtatccagtcacatttatagg 24185596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 909 - 953
Target Start/End: Complemental strand, 14113324 - 14113280
Alignment:
Q  909 actttttagatacattgaataattaatgtattcaatcacatttat 953  Q
    ||||||||||||||||||||||||||||||| |  ||||||||||    
T  14113324 actttttagatacattgaataattaatgtatacggtcacatttat 14113280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 908 - 956
Target Start/End: Original strand, 20694447 - 20694495
Alignment:
Q  908 aactttttagatacattgaataattaatgtattcaatcacatttatagg 956  Q
    |||||||||||||||||||||||||||| |||  | |||||||||||||    
T  20694447 aactttttagatacattgaataattaatttatcaagtcacatttatagg 20694495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 909 - 939
Target Start/End: Original strand, 158456 - 158486
Alignment:
Q  909 actttttagatacattgaataattaatgtat 939  Q
    |||||||||||||||||||||||||||||||    
T  158456 actttttagatacattgaataattaatgtat 158486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 890 - 939
Target Start/End: Original strand, 1157009 - 1157063
Alignment:
Q  890 gatcacatttataaggaaaa-----ctttttagatacattgaataattaatgtat 939  Q
    ||||||||||||||| ||||     ||||||||||||||||||||||||||||||    
T  1157009 gatcacatttataagtaaaatgcagctttttagatacattgaataattaatgtat 1157063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 911 - 956
Target Start/End: Complemental strand, 15996225 - 15996180
Alignment:
Q  911 tttttagatacattgaataattaatgtattcaatcacatttatagg 956  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||    
T  15996225 tttttagatacattgaataattaatgtatccaatcacgtttatagg 15996180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 912 - 952
Target Start/End: Original strand, 12810341 - 12810381
Alignment:
Q  912 ttttagatacattgaataattaatgtattcaatcacattta 952  Q
    ||||||||||||||||||||||||||||||  |||||||||    
T  12810341 ttttagatacattgaataattaatgtattcggtcacattta 12810381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 909 - 940
Target Start/End: Original strand, 26982793 - 26982824
Alignment:
Q  909 actttttagatacattgaataattaatgtatt 940  Q
    ||||||||||||||||||||||||||||||||    
T  26982793 actttttagatacattgaataattaatgtatt 26982824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 909 - 939
Target Start/End: Complemental strand, 43250450 - 43250420
Alignment:
Q  909 actttttagatacattgaataattaatgtat 939  Q
    |||||||||||||||||||||||||||||||    
T  43250450 actttttagatacattgaataattaatgtat 43250420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 909 - 954
Target Start/End: Original strand, 23097530 - 23097575
Alignment:
Q  909 actttttagatacattgaataattaatgtattcaatcacatttata 954  Q
    ||||||||| ||||||||| ||||||||||| | ||||||||||||    
T  23097530 actttttaggtacattgaacaattaatgtatcccatcacatttata 23097575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 912 - 953
Target Start/End: Complemental strand, 34670461 - 34670420
Alignment:
Q  912 ttttagatacattgaataattaatgtattcaatcacatttat 953  Q
    ||||| |||||||||||||||||||||| | |||||||||||    
T  34670461 ttttaaatacattgaataattaatgtatccgatcacatttat 34670420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 886 - 939
Target Start/End: Original strand, 5069941 - 5069999
Alignment:
Q  886 ctctgatcacatttataaggaa-----aactttttagatacattgaataattaatgtat 939  Q
    ||||||||||||||||||| ||     ||||||||||||||||||||||||||||||||    
T  5069941 ctctgatcacatttataagcaaaaaacaactttttagatacattgaataattaatgtat 5069999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 911 - 955
Target Start/End: Complemental strand, 8051087 - 8051043
Alignment:
Q  911 tttttagatacattgaataattaatgtattcaatcacatttatag 955  Q
    ||||| |||||||| ||||||||||||||| ||||||||||||||    
T  8051087 tttttggatacatttaataattaatgtatttaatcacatttatag 8051043  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 922 - 956
Target Start/End: Complemental strand, 16260721 - 16260687
Alignment:
Q  922 attgaataattaatgtattcaatcacatttatagg 956  Q
    ||||||||||||||||||||| |||||||||||||    
T  16260721 attgaataattaatgtattcagtcacatttatagg 16260687  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 909 - 939
Target Start/End: Complemental strand, 29938726 - 29938696
Alignment:
Q  909 actttttagatacattgaataattaatgtat 939  Q
    |||||||||||||||||||||||||||||||    
T  29938726 actttttagatacattgaataattaatgtat 29938696  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 908 - 941
Target Start/End: Original strand, 1158277 - 1158310
Alignment:
Q  908 aactttttagatacattgaataattaatgtattc 941  Q
    |||||||||||| |||||||||||||||||||||    
T  1158277 aactttttagattcattgaataattaatgtattc 1158310  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 911 - 956
Target Start/End: Complemental strand, 19790832 - 19790787
Alignment:
Q  911 tttttagatacattgaataattaatgtattcaatcacatttatagg 956  Q
    ||||||||||||||||||| || |||||| ||||||||||||||||    
T  19790832 tttttagatacattgaatacttgatgtatgcaatcacatttatagg 19790787  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 909 - 940
Target Start/End: Original strand, 35239682 - 35239713
Alignment:
Q  909 actttttagatacattgaataattaatgtatt 940  Q
    ||||||||||||||||||||||||||||||||    
T  35239682 actttttagatacattgaataattaatgtatt 35239713  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 908 - 954
Target Start/End: Complemental strand, 41067766 - 41067720
Alignment:
Q  908 aactttttagatacattgaataattaatgtattcaatcacatttata 954  Q
    ||||||||| ||||||||||||||||| ||||  |||||||||||||    
T  41067766 aactttttaaatacattgaataattaaggtatctaatcacatttata 41067720  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 911 - 956
Target Start/End: Original strand, 29212874 - 29212919
Alignment:
Q  911 tttttagatacattgaataattaatgtattcaatcacatttatagg 956  Q
    |||||||||| |||||||||| ||||||| || |||||||||||||    
T  29212874 tttttagatatattgaataatcaatgtatccagtcacatttatagg 29212919  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 909 - 942
Target Start/End: Original strand, 29497389 - 29497422
Alignment:
Q  909 actttttagatacattgaataattaatgtattca 942  Q
    |||||||||||||||||| |||||||||||||||    
T  29497389 actttttagatacattgactaattaatgtattca 29497422  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 909 - 938
Target Start/End: Complemental strand, 36344547 - 36344518
Alignment:
Q  909 actttttagatacattgaataattaatgta 938  Q
    ||||||||||||||||||||||||||||||    
T  36344547 actttttagatacattgaataattaatgta 36344518  T

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Target: chr5 (Bit Score: 31; Significance: 0.0000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 911 - 953
Target Start/End: Complemental strand, 14509930 - 14509888
Alignment:
Q  911 tttttagatacattgaataattaatgtattcaatcacatttat 953  Q
    |||||||||| |||||||||||||||||| |||||| ||||||    
T  14509930 tttttagatatattgaataattaatgtatccaatcatatttat 14509888  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 909 - 939
Target Start/End: Original strand, 26221053 - 26221083
Alignment:
Q  909 actttttagatacattgaataattaatgtat 939  Q
    |||||||||||||||||||||||||||||||    
T  26221053 actttttagatacattgaataattaatgtat 26221083  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 890 - 945
Target Start/End: Complemental strand, 28499916 - 28499857
Alignment:
Q  890 gatcacatttataaggaaaa----ctttttagatacattgaataattaatgtattcaatc 945  Q
    ||||||||||||||| ||||    ||||||||||| ||||||||||||||||||| ||||    
T  28499916 gatcacatttataagaaaaaataactttttagatatattgaataattaatgtatttaatc 28499857  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 911 - 940
Target Start/End: Complemental strand, 20269551 - 20269522
Alignment:
Q  911 tttttagatacattgaataattaatgtatt 940  Q
    ||||||||||||||||||||||||||||||    
T  20269551 tttttagatacattgaataattaatgtatt 20269522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 909 - 942
Target Start/End: Original strand, 21032561 - 21032594
Alignment:
Q  909 actttttagatacattgaataattaatgtattca 942  Q
    |||||||| |||||||||||||||||||||||||    
T  21032561 actttttatatacattgaataattaatgtattca 21032594  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 908 - 953
Target Start/End: Complemental strand, 41517476 - 41517431
Alignment:
Q  908 aactttttagatacattgaataattaatgtattcaatcacatttat 953  Q
    |||||||||  ||||||||||||||||||||| | |||||||||||    
T  41517476 aactttttaagtacattgaataattaatgtatccgatcacatttat 41517431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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