View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0290_high_1 (Length: 688)
Name: NF0290_high_1
Description: NF0290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0290_high_1 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 138 - 688
Target Start/End: Original strand, 52779639 - 52780189
Alignment:
| Q |
138 |
catcacgaaccacaataaccaaaaatcaacctcgttaatgttcacaaaacgatccttaataagatccttaacatgtatactnnnnnnncttcatgcaggt |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
52779639 |
catcacgaaccacaataaccaaaaatcaacctcgttaatgttcacaaaacgatccttaataagatccataacatgtatactaaaaaaacttcatgcaggt |
52779738 |
T |
|
| Q |
238 |
tatttcagaattagcctctcatttggtggccaagcattactatggaaaacactaattgatccaacaaacgacacaagcaaatcaagacacgtgcttagca |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52779739 |
tatttcagaattagcctctcatttggtggccaagcattactatggaaaacactaattgatccaacaaacgacacaagcaaatcaagacacgtgcttagca |
52779838 |
T |
|
| Q |
338 |
tgcttccttcctctgttttcatagtactatggtctatgtctctttttatactcgcattactctctcttctttacctcttaagatgtttatttttctttaa |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52779839 |
tgcttccttcctctgttttcatagtactatggtctatgtctctttttatactcgcattactctctcttctttacctcttaagatgtttatttttctttaa |
52779938 |
T |
|
| Q |
438 |
gatggtaaaagaagagttcttacaccatgtaggagttaactatcttttcgctccatggatttcatggtttctattacttcaatcagcaccattcatagct |
537 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52779939 |
gatggtaaaagaagagttcttacaccatgtaggagttaactatcttttcgctccatggatttcatggtttctattacttcaatcagcaccattcatagct |
52780038 |
T |
|
| Q |
538 |
cccaaaaccattacttatttaattctatggtgggttttcacggttccggtggttgttctcgatgttaaaatttacggccagtggtttactaaagggaaga |
637 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52780039 |
cccaaaaccattacttatttaattctatggtgggttttcacggttccggtggttgttctcgatgttaaaatttacggccagtggtttactaaagggaaga |
52780138 |
T |
|
| Q |
638 |
gatcattcttaacaacggtggcgaatccaacgagtcatttatcggttatag |
688 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52780139 |
gatcattcttaacaacggtggcgaatccaacgagtcatttatcggttatag |
52780189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 580 - 637
Target Start/End: Original strand, 17470597 - 17470654
Alignment:
| Q |
580 |
gttccggtggttgttctcgatgttaaaatttacggccagtggtttactaaagggaaga |
637 |
Q |
| |
|
||||| |||||| |||| ||||| |||||||| || |||||||||||||||||||||| |
|
|
| T |
17470597 |
gttcctgtggttattcttgatgtgaaaatttatggtcagtggtttactaaagggaaga |
17470654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 462 times since January 2019
Visitors: 2566