View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0290_high_2 (Length: 429)
Name: NF0290_high_2
Description: NF0290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0290_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 65 - 419
Target Start/End: Complemental strand, 1128077 - 1127726
Alignment:
| Q |
65 |
taattcttaaattgtcattctctacgtatttagttgttgaactataaacatatgatnnnnnnnttctaaactattcaaaattcatcatattggtacatca |
164 |
Q |
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| T |
1128077 |
taattcttaaattgtcaatctctacgtatttagttgttgaactataaacgtatgataaataatttctaaactattcaaaattcatcatgttggtacatca |
1127978 |
T |
|
| Q |
165 |
attaggaggagataagttactttcaaaataggagtttataaactaataaataattgaagataaattgaaacgcacctgcaatacaagaaggggatatgtt |
264 |
Q |
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| T |
1127977 |
attaggag---ataagttactttcaaaataggagtttataaactaataaataattgaagataaattgaaacgcacctgcaatacaagaaggggatatgtt |
1127881 |
T |
|
| Q |
265 |
tcgattccgcgcgaataatcaacggctgggataagctgacggagctcaagcgtgggagcaaagtctccaaaatcatcaacgactccaccggtgtcagcct |
364 |
Q |
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| T |
1127880 |
tcgattccgcgcgaataatcaacggctgggataagctggcggagctcaagcgtgggagcaaagtctccaaaatcatcaacgactccaccggtgtcagcct |
1127781 |
T |
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| Q |
365 |
cgacaaagagcaccccttgaccatcacaatcaatctcaacacgaccatcttcatc |
419 |
Q |
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| T |
1127780 |
cgacaaagagcaccccttgaccatcacaatcaatctcaacacgaccatcttcatc |
1127726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 287
Target Start/End: Complemental strand, 1108395 - 1108316
Alignment:
| Q |
208 |
taataaataattgaagataaattgaaacgcacctgcaatac-aagaaggggatatgtttcgattccgcgcgaataatcaac |
287 |
Q |
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| T |
1108395 |
taataaataattgaaga-aaatggaaacacacctgcaacaccaagagggggatacgtttcgattccgctcgaataatcaac |
1108316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 277 - 421
Target Start/End: Original strand, 27358821 - 27358965
Alignment:
| Q |
277 |
gaataatcaacggctgggataagctgacggagctcaagcgtgggagcaaagtctccaaaatcatcaacgactccaccggtgtcagcctcgacaaagagca |
376 |
Q |
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| T |
27358821 |
gaataatccacggctgggattaactgacggaggcgaagtgttggagcaaagtcactgaagtcatcaacggaagcggtggtatcagcatcgacgaagagca |
27358920 |
T |
|
| Q |
377 |
ccccttgaccatcacaatcaatctcaacacgaccatcttcatctc |
421 |
Q |
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| T |
27358921 |
ccccttgaccatcgcaataaagctcaacacgaccatcttcatctc |
27358965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 277 - 421
Target Start/End: Complemental strand, 45408285 - 45408141
Alignment:
| Q |
277 |
gaataatcaacggctgggataagctgacggagctcaagcgtgggagcaaagtctccaaaatcatcaacgactccaccggtgtcagcctcgacaaagagca |
376 |
Q |
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|||||||| ||||||||||| | ||||||||| ||| || ||||||||||| || || ||||||||| | ||| ||||| ||||| ||||||| |
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| T |
45408285 |
gaataatccacggctgggattaactgacggaggcgaagtgttggagcaaagtcaccgaagtcatcaacggaagcggtggtatcagcatcgacgaagagca |
45408186 |
T |
|
| Q |
377 |
ccccttgaccatcacaatcaatctcaacacgaccatcttcatctc |
421 |
Q |
| |
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||||||||||||| |||| || ||||| |||||||||||||||| |
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| T |
45408185 |
ccccttgaccatcgcaataaagctcaatgcgaccatcttcatctc |
45408141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 415
Target Start/End: Original strand, 31966975 - 31967182
Alignment:
| Q |
208 |
taataaataattgaagataaattgaaacgcacctgcaatacaagaaggggatatgtttcgattccgcgcgaataatcaacggctgggataagctgacgga |
307 |
Q |
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|||||| ||| |||| | |||||||||| |||||||| || || |||||||||||||||||||||||||| |||||||| || |||||||| | | |
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| T |
31966975 |
taataagtaaatgaaaaaaaattgaaacatacctgcaacactaggaggggatatgtttcgattccgcgcgagtaatcaacaatgggaataagctggccca |
31967074 |
T |
|
| Q |
308 |
gctcaagcgtgggagcaaagtctccaaaatcatcaacgactccaccggtgtcagcctcgacaaagagcaccccttgaccatcacaatcaatctcaacacg |
407 |
Q |
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| T |
31967075 |
agtgcaatgtgggagcaaagtcaccaaaatcatctatgaatgagttagtggcagcttcaacaaagagcaccccttgaccgtcacagtcgatctctacacg |
31967174 |
T |
|
| Q |
408 |
accatctt |
415 |
Q |
| |
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||| |||| |
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|
| T |
31967175 |
accgtctt |
31967182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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