View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0290_high_4 (Length: 397)
Name: NF0290_high_4
Description: NF0290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0290_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 34957976 - 34957598
Alignment:
| Q |
1 |
cacagatcacttcatctggttcacaacctacatcgagcatctccaagaagatctcttcagcgagattaagctttccaacttgcccatatagacgcaagac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34957976 |
cacagatcacttcatctggttcacaacctacatcgagcatctccaagaagatctcttcagcgagattaagctttccaacttgcccatatagacgcaagac |
34957877 |
T |
|
| Q |
101 |
tatcgtgtaggcaataacactcggatggtaactcaactgttgaaccacagaactatcaatacaaagtatcaatttctatacaatgaggccaaacaacata |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34957876 |
tatcgtgtaggcaataacactcggatggtagctcaactgttgaaccacagaactatcaatacaaagtatcaatttctatacaatgaggccaaacaacata |
34957777 |
T |
|
| Q |
201 |
aataaataaaagaacaattaagtgaaatccatgcgattcccatcctatcaaacaaacagtggtcctgtattatttagtaagaccccatgaattttatcat |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
34957776 |
aataaataaaagaacaattaagtgaaatccatgtgattcccatcctatcaaacaaaaagtggtcctgtattatttagtaagaccccgtgaattt--tcat |
34957679 |
T |
|
| Q |
301 |
gtctaaaatattgtcaaattgtcacgttgcactcctcaaaataaaaggaacttaggagattcattgaaaagaaagaaataa |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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|
| T |
34957678 |
gtctaaaatattgtcaaattgtcacgttgcactcctcaaaataaaaggagattaggagattcaatgaaaagaaagaaataa |
34957598 |
T |
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