View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0290_high_5 (Length: 386)
Name: NF0290_high_5
Description: NF0290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0290_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 357
Target Start/End: Original strand, 31173152 - 31173508
Alignment:
| Q |
16 |
gagatgaagacgaagaaagtagcaaaggaatccaaacctaagaaagtttcaaaaccacgaaaccctgcttcccatcctacttacgaagaggttcgttttg |
115 |
Q |
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| T |
31173152 |
gagaagaagacgaagaaagtagcaaaggaatccaaacctaagaaagtttccaaaccacgaaaccctgcttcccatcctacttacgaagaggttcgtttcg |
31173251 |
T |
|
| Q |
116 |
atttcaattcattcttttt---------------gttacaaattatagtttcaattggatctaatttgaacgaattgcagatgattaaggatgcaattgt |
200 |
Q |
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| T |
31173252 |
atttcaattcattctttttctaattcttcgttttgttacaaattatagtttcaattgaatgtaatttgaacgaattgcagatgattaaggatgcaattgt |
31173351 |
T |
|
| Q |
201 |
gtcgctgaaggagaggactggttcaagccaatacgcaattgcgaaattcatcgaagagaaacacaaacagcttccttcaaatttcaagaagttattgctt |
300 |
Q |
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| T |
31173352 |
gtcgctgaaggagaggactggttcaagccaatacgcaattgcgaaattcatcgaagagaaacacaaacagcttccttcaaatttcaagaagttattgctt |
31173451 |
T |
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| Q |
301 |
cagaatttgaagaagaatgttgcttctggaaaacttgttaaggtgaaaggttcattc |
357 |
Q |
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| T |
31173452 |
cagaatttgaagaagaatgttgcttctggaaaacttgttaaggtgaaaggttcattc |
31173508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 357
Target Start/End: Complemental strand, 31227302 - 31226946
Alignment:
| Q |
16 |
gagatgaagacgaagaaagtagcaaaggaatccaaacctaagaaagtttcaaaaccacgaaaccctgcttcccatcctacttacgaagaggttcgttttg |
115 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31227302 |
gagaagaagacgaagaaagtagcaaaggaatccaaacctaagaaagtttccaaaccacgaaaccctgcttcccatcctacttacgaagaggttcgtttcg |
31227203 |
T |
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| Q |
116 |
atttcaattcattcttttt---------------gttacaaattatagtttcaattggatctaatttgaacgaattgcagatgattaaggatgcaattgt |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
31227202 |
atttcaattcattctttttctaattcttcgttttgttacaaattatagtttcaattgaatgtaatttgaacgaattgcagatgattaaggatgcaattgt |
31227103 |
T |
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| Q |
201 |
gtcgctgaaggagaggactggttcaagccaatacgcaattgcgaaattcatcgaagagaaacacaaacagcttccttcaaatttcaagaagttattgctt |
300 |
Q |
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| T |
31227102 |
gtcgctgaaggagaggactggttcaagccaatacgcaattgcgaaattcatcgaagagaaacacaaacagcttccttcaaatttcaagaagttattgctt |
31227003 |
T |
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| Q |
301 |
cagaatttgaagaagaatgttgcttctggaaaacttgttaaggtgaaaggttcattc |
357 |
Q |
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| T |
31227002 |
cagaatttgaagaagaatgttgcttctggaaaacttgttaaggtgaaaggttcattc |
31226946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 178 - 357
Target Start/End: Complemental strand, 31232371 - 31232192
Alignment:
| Q |
178 |
cagatgattaaggatgcaattgtgtcgctgaaggagaggactggttcaagccaatacgcaattgcgaaattcatcgaagagaaacacaaacagcttcctt |
277 |
Q |
| |
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|||||||||||||||||||||||| | |||| ||||| ||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31232371 |
cagatgattaaggatgcaattgtgactttgaaagagagaactggttcaagtcaatttgcaattgcgaaattcattgaagagaaacacaaacagcttcctt |
31232272 |
T |
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| Q |
278 |
caaatttcaagaagttattgcttcagaatttgaagaagaatgttgcttctggaaaacttgttaaggtgaaaggttcattc |
357 |
Q |
| |
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|||||||||||||| |||||||||| |||||||||||||| |||||||||||||| ||| ||||||| |||||||||||| |
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| T |
31232271 |
caaatttcaagaagctattgcttcataatttgaagaagaacgttgcttctggaaagcttattaaggttaaaggttcattc |
31232192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 16 - 357
Target Start/End: Original strand, 32797835 - 32798200
Alignment:
| Q |
16 |
gagatgaagacgaagaaagtagcaaaggaatccaaacctaagaaagtttcaaaaccacgaaaccctgcttcccatcctacttacgaagaggttcgttttg |
115 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32797835 |
gagaagaagacgaagaaagtagcgaaggaatccaaacctaagaaagcttccaaaccacgaaaccctgcttctcatcctacttacgaagaggttcgtttca |
32797934 |
T |
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| Q |
116 |
att-tcaattca-----------ttctt---tttgttacaaattatagtttcaattggatctaattt-----------gaacgaattgcagatgattaag |
189 |
Q |
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||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||| |||| | ||||||||||||||| |
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| T |
32797935 |
attctcaattcactcctttctaattcttagttttgttacgaattatagtttcaattggatctaattttttattgatttgaacaatttgcagatgattaag |
32798034 |
T |
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| Q |
190 |
gatgcaattgtgtcgctgaaggagaggactggttcaagccaatacgcaattgcgaaattc-atcgaagagaaacacaaacagcttccttcaaatttcaag |
288 |
Q |
| |
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||||||||||| || |||||||| ||||| |||||||||||||| || ||||| |||||| || ||||||||||||||||||||||| |||||||||||| |
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| T |
32798035 |
gatgcaattgtatctctgaaggataggacgggttcaagccaatatgcgattgcaaaattcaattgaagagaaacacaaacagcttccatcaaatttcaag |
32798134 |
T |
|
| Q |
289 |
aagttattgcttcagaatttgaagaagaatgttgcttctggaaaacttgttaaggtgaaaggttcattc |
357 |
Q |
| |
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|| |||||| |||||| ||| ||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
32798135 |
aaattattgtttcagagttt---gaagaatgttgcttctggaaagctcgttaaggtgaaaggttcattc |
32798200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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