View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0290_high_6 (Length: 321)
Name: NF0290_high_6
Description: NF0290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0290_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 3 - 292
Target Start/End: Original strand, 10005010 - 10005299
Alignment:
| Q |
3 |
gatgtcgaagaatattcgagaagttatactagcttactgtataatatttgttgctacttgttagtgttgtgtgttaattccttaattttcattagaatag |
102 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10005010 |
gatgttgaagactattcgagaagttatactagcttactgtataatatttgttgctacttgttagtgttgtgtgttaattccttaattttcattagaatag |
10005109 |
T |
|
| Q |
103 |
tccctcggatgcaatgactcgaatcttgagataaatcaaagaatctctggaaaataagtaaattataagaacataggtccactaatagtgtttcgcatac |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10005110 |
tccctcggatgcaatgactcgaatcttgagataaatcaaagaatctctggaaaataagtaacttataagaacataggtccactaatagtgtttcgcatac |
10005209 |
T |
|
| Q |
203 |
aaatgcagatcggactagatgctacaatgatccacaataaacctctaatgggtgagatgccccaaagatgggggaatcttacttttctta |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10005210 |
aaatgcagatcggactagatgctacaatgatccacaataaacctctaatgggtgagatgccccaaagatgggggaatcttacttttctta |
10005299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 864 times since January 2019
Visitors: 2569