View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0290_low_1 (Length: 688)
Name: NF0290_low_1
Description: NF0290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0290_low_1
[» ] chr3 (1 HSPs)
Alignment Details
Target: chr3 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 138 - 688
Target Start/End: Original strand, 52779639 - 52780189
Alignment:
Q
138
catcacgaaccacaataaccaaaaatcaacctcgttaatgttcacaaaacgatccttaataagatccttaacatgtatactnnnnnnncttcatgcaggt
237
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
T
52779639
catcacgaaccacaataaccaaaaatcaacctcgttaatgttcacaaaacgatccttaataagatccataacatgtatactaaaaaaacttcatgcaggt
52779738
T
Q
238
tatttcagaattagcctctcatttggtggccaagcattactatggaaaacactaattgatccaacaaacgacacaagcaaatcaagacacgtgcttagca
337
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
52779739
tatttcagaattagcctctcatttggtggccaagcattactatggaaaacactaattgatccaacaaacgacacaagcaaatcaagacacgtgcttagca
52779838
T
Q
338
tgcttccttcctctgttttcatagtactatggtctatgtctctttttatactcgcattactctctcttctttacctcttaagatgtttatttttctttaa
437
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
52779839
tgcttccttcctctgttttcatagtactatggtctatgtctctttttatactcgcattactctctcttctttacctcttaagatgtttatttttctttaa
52779938
T
Q
438
gatggtaaaagaagagttcttacaccatgtaggagttaactatcttttcgctccatggatttcatggtttctattacttcaatcagcaccattcatagct
537
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
52779939
gatggtaaaagaagagttcttacaccatgtaggagttaactatcttttcgctccatggatttcatggtttctattacttcaatcagcaccattcatagct
52780038
T
Q
538
cccaaaaccattacttatttaattctatggtgggttttcacggttccggtggttgttctcgatgttaaaatttacggccagtggtttactaaagggaaga
637
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
52780039
cccaaaaccattacttatttaattctatggtgggttttcacggttccggtggttgttctcgatgttaaaatttacggccagtggtttactaaagggaaga
52780138
T
Q
638
gatcattcttaacaacggtggcgaatccaacgagtcatttatcggttatag
688
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||
T
52780139
gatcattcttaacaacggtggcgaatccaacgagtcatttatcggttatag
52780189
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 580 - 637
Target Start/End: Original strand, 17470597 - 17470654
Alignment:
Q
580
gttccggtggttgttctcgatgttaaaatttacggccagtggtttactaaagggaaga
637
Q
||||| |||||| |||| ||||| |||||||| || ||||||||||||||||||||||
T
17470597
gttcctgtggttattcttgatgtgaaaatttatggtcagtggtttactaaagggaaga
17470654
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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