View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0290_low_10 (Length: 250)

Name: NF0290_low_10
Description: NF0290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0290_low_10
NF0290_low_10
[»] chr2 (16 HSPs)
chr2 (5-242)||(39214730-39214967)
chr2 (70-240)||(39601861-39602031)
chr2 (69-195)||(39450414-39450540)
chr2 (74-186)||(39220086-39220198)
chr2 (72-186)||(39199516-39199630)
chr2 (69-192)||(39151816-39151939)
chr2 (72-183)||(39382247-39382358)
chr2 (69-192)||(39458127-39458250)
chr2 (73-183)||(39488225-39488335)
chr2 (122-241)||(44614345-44614464)
chr2 (69-195)||(39399044-39399170)
chr2 (13-63)||(39399051-39399101)
chr2 (69-192)||(39474308-39474431)
chr2 (69-146)||(39416403-39416480)
chr2 (13-46)||(39458210-39458243)
chr2 (158-211)||(39479278-39479331)
[»] chr6 (2 HSPs)
chr6 (13-65)||(16112406-16112458)
chr6 (69-186)||(16112348-16112465)


Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 39214967 - 39214730
Alignment:
Q  5 tcaacatatctctttatggactgcaatctcttctcctctactgtcctcttcctcttgcaatgcccaatatctctctttagagactgcaatctcttctcat 104  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39214967 tcaacatatctctttatggactgcaatctcttctcctctactttcctcttcctcttgcaatgcccaatatctctctttagagactgaaatctcttctcat 39214868  T
Q  105 ctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcagcaaggaaaatgatttatcggttgatttgcctggcct 204  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  39214867 ctacttgcaccttccttttgcattcctcaaataatttttctaacatagcaaggtctttcttcagcgaggaaaatgatttatgggttgatttgcctggcct 39214768  T
Q  205 tttaattaaatccgacaaaagaatatcatcttcatctc 242  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39214767 tttaattaaatccgacaaaagaatatcatcttcatctc 39214730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 70 - 240
Target Start/End: Complemental strand, 39602031 - 39601861
Alignment:
Q  70 aatatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcagc 169  Q
    ||||||| ||||||  ||||||||||| ||||| |||| || |  |||| | |||| ||||| |||| | || |||||||  |||||| |||||||||||    
T  39602031 aatatctatctttatggactgcaatctattctcttctaatttcgtcttcttattgccttcctgaaatgagttttctaacaatgcaaggcctttcttcagc 39601932  T
Q  170 aaggaaaatgatttatcggttgatttgcctggccttttaattaaatccgacaaaagaatatcatcttcatc 240  Q
     |||||||||||||||| |||||||||| ||||||||||||||||||| ||||| ||||||||||||||||    
T  39601931 gaggaaaatgatttatcagttgatttgcttggccttttaattaaatccaacaaaggaatatcatcttcatc 39601861  T

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Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 69 - 195
Target Start/End: Complemental strand, 39450540 - 39450414
Alignment:
Q  69 caatatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcag 168  Q
    |||||||| |||| |  |||||||||||||| || ||||||| |  ||||||||| ||||||||||||||||| |||||||  | |||||||||||||||    
T  39450540 caatatctgtcttgatggactgcaatctcttttcttctactttctgcttccttttacattcctcaaataatttttctaacaatgtaaggtctttcttcag 39450441  T
Q  169 caaggaaaatgatttatcggttgattt 195  Q
    | |||||||||||||||| ||| ||||    
T  39450440 cgaggaaaatgatttatcagttaattt 39450414  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 74 - 186
Target Start/End: Complemental strand, 39220198 - 39220086
Alignment:
Q  74 tctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcagcaagg 173  Q
    ||||||||||  ||||| |||||  |||| || |||| |  ||||||||| || |||||||||||||| |||||||  |||||||||||||||||| |||    
T  39220198 tctctctttatggactgtaatcttctctcttcaactttctgcttccttttacactcctcaaataatttttctaacaccgcaaggtctttcttcagcgagg 39220099  T
Q  174 aaaatgatttatc 186  Q
    |||||||||||||    
T  39220098 aaaatgatttatc 39220086  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 186
Target Start/End: Original strand, 39199516 - 39199630
Alignment:
Q  72 tatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcagcaa 171  Q
    ||||||||||||  ||||||||||| ||||| || |||| |  ||||||||||||||||| ||||||||  |||| ||  | ||| |||||||||||| |    
T  39199516 tatctctctttatggactgcaatcttttctcttcaactttctgcttccttttgcattccttaaataattcttctagcagcgtaagctctttcttcagcga 39199615  T
Q  172 ggaaaatgatttatc 186  Q
    |||||||||||||||    
T  39199616 ggaaaatgatttatc 39199630  T

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Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 192
Target Start/End: Complemental strand, 39151939 - 39151816
Alignment:
Q  69 caatatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcag 168  Q
    |||||| ||||||||  ||||||| ||||||||| |||||||||   |||||||||||||| |||| | |||| || |  |  ||||| |||||||||||    
T  39151939 caatatttctctttattgactgcagtctcttctcttctacttgccttttccttttgcattcatcaattgatttttccacaaatgcaagctctttcttcag 39151840  T
Q  169 caaggaaaatgatttatcggttga 192  Q
    |||||||| ||||||||| |||||    
T  39151839 caaggaaattgatttatcagttga 39151816  T

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Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 39382247 - 39382358
Alignment:
Q  72 tatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcagcaa 171  Q
    ||||||||||||  ||||| ||||||||||| |||| || |  ||||| |||||||||| |||||||||  |||||||  | |||||||||||||||| |    
T  39382247 tatctctctttatggactgtaatctcttctcttctagtttctgcttccatttgcattccacaaataattcttctaacagcgtaaggtctttcttcagcga 39382346  T
Q  172 ggaaaatgattt 183  Q
    |||||| |||||    
T  39382347 ggaaaacgattt 39382358  T

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Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 192
Target Start/End: Complemental strand, 39458250 - 39458127
Alignment:
Q  69 caatatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcag 168  Q
    |||||||||||||||  ||||||||||||||||| ||||||||   | |||||||||| ||||||||| |||| |||| ||  |  || |||||||||||    
T  39458250 caatatctctctttatggactgcaatctcttctcttctacttgtctcgtccttttgcaatcctcaaatgatttttctaccaatgtgagttctttcttcag 39458151  T
Q  169 caaggaaaatgatttatcggttga 192  Q
    | || ||||||||| ||| |||||    
T  39458150 cgagaaaaatgattcatcagttga 39458127  T

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Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 183
Target Start/End: Original strand, 39488225 - 39488335
Alignment:
Q  73 atctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcagcaag 172  Q
    ||||||||||| |||||||| ||||  ||| |||||||||   ||||||||||||||||||||| |  | |||| ||  ||||| ||||| |||||||||    
T  39488225 atctctctttatagactgcagtctcccctcttctacttgccttttccttttgcattcctcaaatgaggtttctaccaatgcaagttcttttttcagcaag 39488324  T
Q  173 gaaaatgattt 183  Q
    |||||||||||    
T  39488325 gaaaatgattt 39488335  T

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Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 44614464 - 44614345
Alignment:
Q  122 ttgcattcctcaaataatttatctaacatagcaaggtctttcttcagcaaggaaaatgatttatcggttgatttgcctggccttttaattaaatccgaca 221  Q
    ||||||||||||||| |||| | ||||   ||||| |||||| ||||| ||||||||||  |||| | ||||||||||| ||||||| ||| || | ||     
T  44614464 ttgcattcctcaaatgatttttttaacgatgcaagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctgaccttttatttatattcaacg 44614365  T
Q  222 aaagaatatcatcttcatct 241  Q
    || |||||||||||||||||    
T  44614364 aaggaatatcatcttcatct 44614345  T

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Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 195
Target Start/End: Original strand, 39399044 - 39399170
Alignment:
Q  69 caatatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcag 168  Q
    |||||||||||||||  ||||||||||||||||| ||||||| |  |||||||||||||| || ||| ||||| |||| ||    ||  |||||||| ||    
T  39399044 caatatctctctttatggactgcaatctcttctcttctactttcctcttccttttgcatttcttaaacaatttttctaccaatttaacttctttcttgag 39399143  T
Q  169 caaggaaaatgatttatcggttgattt 195  Q
    | | |||||||||||||| | ||||||    
T  39399144 cgatgaaaatgatttatcagctgattt 39399170  T

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Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 39399051 - 39399101
Alignment:
Q  13 tctctttatggactgcaatctcttctcctctactgtcctcttcctcttgca 63  Q
    ||||||||||||||||||||||||||| |||||| |||||||||| |||||    
T  39399051 tctctttatggactgcaatctcttctcttctactttcctcttccttttgca 39399101  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 192
Target Start/End: Original strand, 39474308 - 39474431
Alignment:
Q  69 caatatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcag 168  Q
    |||||||||||||||  || |||||||||| ||  |||| ||||  | |||||| ||| ||||||||| |||| ||||  |  ||||| |||||||| ||    
T  39474308 caatatctctctttatggaatgcaatctctccttttctatttgcgtcgtcctttggcaatcctcaaatgatttttctacaaatgcaagttctttcttgag 39474407  T
Q  169 caaggaaaatgatttatcggttga 192  Q
      |||||||||||||||| |||||    
T  39474408 tgaggaaaatgatttatccgttga 39474431  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 39416403 - 39416480
Alignment:
Q  69 caatatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatcta 146  Q
    |||||||||||||||  || |||||||||||||  ||||||||||  | |||| ||| |||||||||| |||| ||||    
T  39416403 caatatctctctttatggaatgcaatctcttcttttctacttgcatgtcccttctgcgttcctcaaatgatttttcta 39416480  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 39458243 - 39458210
Alignment:
Q  13 tctctttatggactgcaatctcttctcctctact 46  Q
    ||||||||||||||||||||||||||| ||||||    
T  39458243 tctctttatggactgcaatctcttctcttctact 39458210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 39479278 - 39479331
Alignment:
Q  158 tctttcttcagcaaggaaaatgatttatcggttgatttgcctggccttttaatt 211  Q
    |||||||||||| |||||||||||||||| || ||||| || | ||||||||||    
T  39479278 tctttcttcagcgaggaaaatgatttatcagtcgattttcccgaccttttaatt 39479331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 16112458 - 16112406
Alignment:
Q  13 tctctttatggactgcaatctcttctcctctactgtcctcttcctcttgcaat 65  Q
    ||||||||||||||||||| ||||||| ||| ||||||||||||| |||||||    
T  16112458 tctctttatggactgcaatttcttctcttcttctgtcctcttccttttgcaat 16112406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 16112465 - 16112348
Alignment:
Q  69 caatatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcag 168  Q
    |||||||||||||||  ||||||||| ||||||| ||| ||  |  |||||||||||| | || ||| ||||| |||| || |  ||  || ||||||||    
T  16112465 caatatctctctttatggactgcaatttcttctcttcttctgtcctcttccttttgcaattcttaaacaatttttctaccaaattaacttcattcttcag 16112366  T
Q  169 caaggaaaatgatttatc 186  Q
    | ||||||||||||||||    
T  16112365 cgaggaaaatgatttatc 16112348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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