View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0290_low_11 (Length: 249)
Name: NF0290_low_11
Description: NF0290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0290_low_11 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 33973435 - 33973575
Alignment:
| Q |
1 |
aaatagtttgatagaagaaagtgcatgcaaatcttcttttgagaatgattcctacgttgttgatgagaaccaatctcttattgtaaaggatgtcgaagag |
100 |
Q |
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| T |
33973435 |
aaatagtttgatagaagaaagtgcatgcaaatcttcttttgagaatgattcctacgttgttgatgagaaccaatctcttattgtaaatgatgtcgaagag |
33973534 |
T |
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| Q |
101 |
acactttacaaggccagagaaattcttgagcttctcaacca |
141 |
Q |
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| T |
33973535 |
acactttacaaggccagagaaattcttgagcttctcaacca |
33973575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 33990274 - 33990406
Alignment:
| Q |
13 |
agaagaaagtgcatgcaaatcttcttttgagaatgattcctacgttgttgatgagaaccaatctcttattgtaaaggatgtcgaagagacactttacaag |
112 |
Q |
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| T |
33990274 |
agaagaaagtgcatgcaaatgttcttctgagaatgattcctatgttgttgatgagaaccaatctcttattgtaaatgatgttgaagagacactttataag |
33990373 |
T |
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| Q |
113 |
gccagagaaattcttgagcttctcaaccatgaa |
145 |
Q |
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| T |
33990374 |
gccagagaaattcttgagcttctcaactatgaa |
33990406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 33959448 - 33959573
Alignment:
| Q |
16 |
agaaagtgcatgcaaatcttcttttgagaatgattcctacgttgttgatgagaaccaatctcttattgtaaaggatgtcgaagagacactttacaaggcc |
115 |
Q |
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| T |
33959448 |
agaaagtgcatgcaaatgttcttctgagaatgattcctatgttgttgatgagaaccaatctcttattgtaaatgatgttgaagaaacactttataagcca |
33959547 |
T |
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| Q |
116 |
agagaaattcttgagcttctcaacca |
141 |
Q |
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| T |
33959548 |
agagaaattcttgagcttctcaacca |
33959573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 33950801 - 33950939
Alignment:
| Q |
16 |
agaaagtgcatgcaaatcttcttttgagaatgattcctacg------ttgttgatgagaaccaatctcttattgtaaaggatgtcgaagagacactttac |
109 |
Q |
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| T |
33950801 |
agaaagtgcatgtacatgttcttctgagaatgattcctatggctatgttgttgaggagaaccaatctcttactgtaaatgatgttgaagagacgctttat |
33950900 |
T |
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| Q |
110 |
aaggccagagaaattcttgagcttctcaaccatgaattc |
148 |
Q |
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| T |
33950901 |
aagaccagagaaattcttgagcttctcaaccatgaattc |
33950939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 10335 - 10424
Alignment:
| Q |
46 |
tgattcctacgttgttgatgagaaccaatctcttattgtaaaggatgtcgaagagacactttacaaggccagagaaattcttgagcttct |
135 |
Q |
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| T |
10335 |
tgattcctatgtcgttgatgataaccaatctcttacggtaaatgatgttaaagagacactttacaaggccagagaaattcttgaacttct |
10424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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