View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0290_low_3 (Length: 398)
Name: NF0290_low_3
Description: NF0290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0290_low_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 97 - 398
Target Start/End: Complemental strand, 52780466 - 52780165
Alignment:
| Q |
97 |
agtgagatgaagaggaatagggacaaaaagaatagcatcttggaaagagtatcaaaatctccaacaatagattcccaagccaaactagccacaccaggtg |
196 |
Q |
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| T |
52780466 |
agtgacatgaagaggaatagggacaaaaagaatagcatcttggaaagagtatcaaaatctccaacaatagattcccaagccaaactagccacaccaggtg |
52780367 |
T |
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| Q |
197 |
ctgcaaagaacaagaagaaaactggccttaacaacgcaggaagacgatcaccaccagacaacctttgataaagtgtcacaaacaacaccaaataatgcac |
296 |
Q |
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| T |
52780366 |
ctgcaaagaacaagaagaaaactggccttaacaacgcaggaagacgatcaccaccagacaacctttgataaagtgtcacaaacaacaccaaataatgcac |
52780267 |
T |
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| Q |
297 |
catccctaatgaaaacaaacaaacagcactttctttccaacccatttctgctgcagcttgtgctccaatcaaatttcctataaccgataaatgactcgtt |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52780266 |
catccctaatgaaaacaaacaaacagcactttctttccaacccatttctgctgcagcttgtgctccaatcaaatttcctataaccgataaatgactcgtt |
52780167 |
T |
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| Q |
397 |
gg |
398 |
Q |
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| T |
52780166 |
gg |
52780165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 215
Target Start/End: Complemental strand, 17470967 - 17470861
Alignment:
| Q |
109 |
aggaatagggacaaaaagaatagcatcttggaaagagtatcaaaatctccaacaatagattcccaagccaaactagccacaccaggtgctgcaaagaaca |
208 |
Q |
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| T |
17470967 |
aggaagagggagagaaagaacagcatcttagaagcagtatcaaagtaaccacaaacagattgccaagccaaactagccatactaggagcagcaaagaaca |
17470868 |
T |
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| Q |
209 |
agaagaa |
215 |
Q |
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| T |
17470867 |
agaagaa |
17470861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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