View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0290_low_7 (Length: 252)

Name: NF0290_low_7
Description: NF0290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0290_low_7
NF0290_low_7
[»] chr2 (21 HSPs)
chr2 (1-248)||(39214930-39215177)
chr2 (4-239)||(39602005-39602240)
chr2 (4-241)||(39450511-39450748)
chr2 (5-241)||(39382037-39382273)
chr2 (4-241)||(39458221-39458458)
chr2 (5-239)||(39199306-39199540)
chr2 (15-139)||(39152012-39152136)
chr2 (23-240)||(39488033-39488249)
chr2 (5-241)||(39474101-39474337)
chr2 (5-240)||(39136294-39136529)
chr2 (4-165)||(39220250-39220411)
chr2 (15-241)||(39416203-39416432)
chr2 (15-139)||(39495377-39495501)
chr2 (15-139)||(39123636-39123760)
chr2 (27-237)||(39422335-39422545)
chr2 (187-241)||(39129495-39129549)
chr2 (4-82)||(39427514-39427592)
chr2 (7-63)||(44896192-44896248)
chr2 (180-241)||(39399012-39399073)
chr2 (191-239)||(27154993-27155041)
chr2 (189-241)||(39391674-39391726)
[»] chr7 (1 HSPs)
chr7 (5-240)||(19806655-19806890)
[»] chr5 (1 HSPs)
chr5 (5-238)||(17058856-17059089)


Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 39215177 - 39214930
Alignment:
Q  1 ccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttcccttccttcactacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215177 ccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttcccttccttcactacaa 39215078  T
Q  101 aatccttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaacacaactgacctgtgtcttcttgttttcaagctcttt 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39215077 aatccttaatacattcttcaatttttccctgcattttctcatgagcctcgtcaattcttctaacacaactgacctgtgtcttcttattttcaagctcttt 39214978  T
Q  201 acagcactcatcaacatatctctttatggactgcaatctctgctcctc 248  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  39214977 acagcactcctcaacatatctctttatggactgcaatctcttctcctc 39214930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 39602240 - 39602005
Alignment:
Q  4 ttgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttcccttccttcactacaaaat 103  Q
    ||||||||||||||||| ||||| || || ||||||||| |||||||||||||||||||||| ||||| |||||||| | ||||||||||||||||||||    
T  39602240 ttgacttgattaagttccatctccttcgttttgagctctagcttgcgctctccaatcaagtcatccatgaaatagagttgcccttccttcactacaaaat 39602141  T
Q  104 ccttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaacacaactgacctgtgtcttcttgttttcaagctctttaca 203  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||  ||||| ||||| |||||| |  |   | ||||| |||||||||||||| |     
T  39602140 ccttaatacattcttcaatttttccctgcattttctcatgagcttcgaaaattcctctaaaacaactaatttcctttttcttattttcaagctctttgcg 39602041  T
Q  204 gcactcatcaacatatctctttatggactgcaatct 239  Q
    |||||| | || || | |||||||||||||||||||    
T  39602040 gcactcctgaatatctatctttatggactgcaatct 39602005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 4 - 241
Target Start/End: Complemental strand, 39450748 - 39450511
Alignment:
Q  4 ttgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttcccttccttcactacaaaat 103  Q
    |||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||  |||||||||||||||| ||||||||| || ||||| |    
T  39450748 ttgacttgattaagttctatctctttcgccttgagctctagcttgcgctctccaatcaagttttccatcaaatagagctgcccttcctttaccacaaact 39450649  T
Q  104 ccttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaacacaactgacctgtgtcttcttgttttcaagctctttaca 203  Q
     ||| ||||| || ||||||| | | |||| ||| ||| || | || |||||||||||||||||||| || ||  | ||||| |||| ||||||||| ||    
T  39450648 gcttgatacaatcgtcaatttcttcctgcactttgtcacgaacttcatcaattcttctaacacaactaacttgctttttcttattttgaagctctttgca 39450549  T
Q  204 gcactcatcaacatatctctttatggactgcaatctct 241  Q
    ||| || |||| || | |||| ||||||||||||||||    
T  39450548 gcagtcctcaatatctgtcttgatggactgcaatctct 39450511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 5 - 241
Target Start/End: Original strand, 39382037 - 39382273
Alignment:
Q  5 tgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttcccttccttcactacaaaatc 104  Q
    |||||||||||||||| | |||||||| |||||||||| |||||||||||||||||| ||  ||||||||||||||||   |||||||||||||||| ||    
T  39382037 tgacttgattaagttccacctcttttgccttgagctctagcttgcgctctccaatcatgttttccatcaaatagagctgatcttccttcactacaaactc 39382136  T
Q  105 cttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaacacaactgacctgtgtcttcttgttttcaagctctttacag 204  Q
    ||| |||||||||||| ||||| | |||| ||| |||  | | |  |||||||||||||||  ||| || ||  ||||||| |||| ||||||||| |||    
T  39382137 cttgatacattcttcagttttttcctgcactttgtcacaaacttgatcaattcttctaacaacactaacttggttcttcttattttgaagctctttgcag 39382236  T
Q  205 cactcatcaacatatctctttatggactgcaatctct 241  Q
    ||||| |||  || ||||||||||||||| |||||||    
T  39382237 cactcttcagtatctctctttatggactgtaatctct 39382273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 4 - 241
Target Start/End: Complemental strand, 39458458 - 39458221
Alignment:
Q  4 ttgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttcccttccttcactacaaaat 103  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |   |||||||  || ||||||    
T  39458458 ttgacttgatgaagttctatctcttttgtcttgagttcttgcttgcgctctccaatcaagtcttccatcaaatagagttgtgcttcctttgctgcaaaat 39458359  T
Q  104 ccttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaacacaactgacctgtgtcttcttgttttcaagctctttaca 203  Q
    |||  | ||||| |||||||||  | |  |||||||   |||| ||||||||||||| |||| || |    |   | |||||||||||||| ||||| ||    
T  39458358 cctcgacacatttttcaattttggcctcgattttcttgcgagcttcgtcaattcttccaacataaatagtttcctttttcttgttttcaagatctttgca 39458259  T
Q  204 gcactcatcaacatatctctttatggactgcaatctct 241  Q
    |||||| |||| || |||||||||||||||||||||||    
T  39458258 gcactcctcaatatctctctttatggactgcaatctct 39458221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 39199306 - 39199540
Alignment:
Q  5 tgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttcccttccttcactacaaaatc 104  Q
    |||||||||||||||||||||||||  ||||||||||| ||||||| |||||||||||||  |||| |||| |||| | ||||| ||| |||||||| ||    
T  39199306 tgacttgattaagttctatctctttcatcttgagctctagcttgcgttctccaatcaagttttccaacaaaaagagttgccctttctttactacaaactc 39199405  T
Q  105 cttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaacacaactgacctgtgtcttcttgttttcaagctctttacag 204  Q
     || ||||| || ||||||||| | |||| || ||   |||| || |||||||||||||||  ||| || ||  ||||||| |||| ||||||||| |||    
T  39199406 attgatacaatcatcaattttttcctgcacttccttgcgagcttcatcaattcttctaacaacactaacttggttcttcttattttgaagctctttgcag 39199505  T
Q  205 cactcatcaacatatctctttatggactgcaatct 239  Q
    ||||| |||  || |||||||||||||||||||||    
T  39199506 cactcttcagtatctctctttatggactgcaatct 39199540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 15 - 139
Target Start/End: Complemental strand, 39152136 - 39152012
Alignment:
Q  15 aagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttcccttccttcactacaaaatccttaatacat 114  Q
    |||||| | ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||  ||||||||||||| | ||||    
T  39152136 aagttccaactcttttgtcttgagttcttgcttgcgctctccaatcaagtcctccatcaaatagagctgcccttcctttgctacaaaatccttgacacat 39152037  T
Q  115 tcttcaatttttccttgcattttct 139  Q
    || |||||||| || ||||||||||    
T  39152036 tcatcaattttcccctgcattttct 39152012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 23 - 240
Target Start/End: Original strand, 39488033 - 39488249
Alignment:
Q  23 tctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttcccttccttcactacaaaatccttaatacattcttcaat 122  Q
    |||||||||| | ||| ||||||||| || ||||||||||||| ||||||||||| ||||  ||||||||  |||||||||| || | ||||||||||||    
T  39488033 tctcttttgtatcgagttcttgcttgtgc-ctccaatcaagtcctccatcaaatatagctgtccttcctttgctacaaaatctttgacacattcttcaat 39488131  T
Q  123 ttttccttgcattttctcatgagcctcgtcaattcttctaacacaactgacctgtgtcttcttgttttcaagctctttacagcactcatcaacatatctc 222  Q
    ||| || ||||||||||  ||| | |||| |||||||| ||||||||| |  |   | ||||| ||||||||||||||| ||||||| ||||||| ||||    
T  39488132 tttcccctgcattttctagtgaacttcgttaattcttccaacacaactaatttcctttttcttattttcaagctctttagagcactcctcaacatctctc 39488231  T
Q  223 tttatggactgcaatctc 240  Q
    ||||| ||||||| ||||    
T  39488232 tttatagactgcagtctc 39488249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 5 - 241
Target Start/End: Original strand, 39474101 - 39474337
Alignment:
Q  5 tgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttcccttccttcactacaaaatc 104  Q
    ||||||||  |||||| || |||||||| ||||| |||||||||||||||  |||||| || |||| |||||||||||  || |||||  ||||||||||    
T  39474101 tgacttgacaaagttccatatcttttgtgttgagttcttgcttgcgctcttgaatcaattcctccaccaaatagagctgtccatcctttgctacaaaatc 39474200  T
Q  105 cttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaacacaactgacctgtgtcttcttgttttcaagctctttacag 204  Q
    ||| | |||||||||||||||||| ||||||||||  ||||| ||||  ||||||| ||||  ||| |  |   | ||||| |||||||||||||   ||    
T  39474201 cttgacacattcttcaatttttccctgcattttcttgtgagcttcgttcattcttccaacatgactaattttctttttcttattttcaagctcttcggag 39474300  T
Q  205 cactcatcaacatatctctttatggactgcaatctct 241  Q
    ||||| |||| || |||||||||||| ||||||||||    
T  39474301 cactcctcaatatctctctttatggaatgcaatctct 39474337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 240
Target Start/End: Complemental strand, 39136529 - 39136294
Alignment:
Q  5 tgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttcccttccttcactacaaaatc 104  Q
    ||||||||  |||||| | |||||||||||| || |||| |||| |||||||||||||||| |||||||||  ||||| |||||||||  ||||||||||    
T  39136529 tgacttgacgaagttccaactcttttgtctttagttctttcttgtgctctccaatcaagtcctccatcaaaccgagctgcccttcctttgctacaaaatc 39136430  T
Q  105 cttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaacacaactgacctgtgtcttcttgttttcaagctctttacag 204  Q
    ||| | |||||| ||||||||||| ||||||||||   |||| |||  |||||||| ||||   || |  |   | ||||| |||||||| ||||  |||    
T  39136429 cttgacacattcgtcaatttttccctgcattttcttgcgagcttcgataattcttccaacatccctaatttcctttttcttattttcaagatcttcgcag 39136330  T
Q  205 cactcatcaacatatctctttatggactgcaatctc 240  Q
    ||||| |||| || ||||||||||||||||||||||    
T  39136329 cactcctcaatatctctctttatggactgcaatctc 39136294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 165
Target Start/End: Complemental strand, 39220411 - 39220250
Alignment:
Q  4 ttgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttcccttccttcactacaaaat 103  Q
    |||||||||| ||||||||||||||||| |||||||||  |||||| ||||  ||||||||  |||||||||||||||| | |||| ||||||||||| |    
T  39220411 ttgacttgatcaagttctatctcttttgccttgagctcaagcttgctctctttaatcaagttttccatcaaatagagctcctcttctttcactacaaact 39220312  T
Q  104 ccttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaaca 165  Q
    |||| ||||| || ||||||||| | |||| ||||||   ||| || |||||||||||||||    
T  39220311 ccttgatacaatcgtcaattttttcctgcactttctcgcaagcatcatcaattcttctaaca 39220250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 241
Target Start/End: Original strand, 39416203 - 39416432
Alignment:
Q  15 aagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttcccttccttcactacaaaatccttaatacat 114  Q
    |||||| | ||||||||||||||| |||||||||||||| | |||||| || |||| |||||||||||  ||||||||  ||||||||||||| | ||||    
T  39416203 aagttccaactcttttgtcttgagttcttgcttgcgctcccgaatcaattcctccaccaaatagagctgtccttcctttgctacaaaatccttgacacat 39416302  T
Q  115 tcttcaatttttccttgcattttctcatgag---cctcgtcaattcttctaacacaactgacctgtgtcttcttgttttcaagctctttacagcactcat 211  Q
    |||||| ||||| | ||||||||||  ||||   | |||| |||||||| |||| |||| |  |   | | ||| |||||||| ||| | |||||||| |    
T  39416303 tcttcagtttttacctgcattttcttgtgagcttcttcgttaattcttccaacataactaatttccttttgcttattttcaagttctctgcagcactcct 39416402  T
Q  212 caacatatctctttatggactgcaatctct 241  Q
    ||| || |||||||||||| ||||||||||    
T  39416403 caatatctctctttatggaatgcaatctct 39416432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 39495377 - 39495501
Alignment:
Q  15 aagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttcccttccttcactacaaaatccttaatacat 114  Q
    ||||||| | |||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||   ||| |||  || |||||||||| |  |||    
T  39495377 aagttctgtttcttttgtcttgagttcttgcttgcgctctccaatcaagtcatccatcaaacagagctgtgcttgctttgctgcaaaatccttgacgcat 39495476  T
Q  115 tcttcaatttttccttgcattttct 139  Q
    |||||||||||| | ||||||||||    
T  39495477 tcttcaattttttcctgcattttct 39495501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 139
Target Start/End: Complemental strand, 39123760 - 39123636
Alignment:
Q  15 aagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttcccttccttcactacaaaatccttaatacat 114  Q
    ||||||| | ||||||||||| || |||| ||||||||||||||||| ||||||||||||| |||| |   ||| ||| || | ||||||||| | | ||    
T  39123760 aagttctgtttcttttgtcttcagttctttcttgcgctctccaatcatgtcgtccatcaaagagagttgtgcttgctttacaagaaaatccttgacaaat 39123661  T
Q  115 tcttcaatttttccttgcattttct 139  Q
    |||||| ||||||| ||||||||||    
T  39123660 tcttcagtttttccctgcattttct 39123636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 39422335 - 39422545
Alignment:
Q  27 ttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttcccttccttcactacaaaatccttaatacattcttcaattttt 126  Q
    |||||| ||||| |||||||||||||||||||||||||  ||||||||| ||||||    ||||||  |||| || ||||  | |||||||||||||||     
T  39422335 ttttgtgttgagttcttgcttgcgctctccaatcaagttttccatcaaagagagctgtgattcctttgctacgaattcctcgacacattcttcaattttc 39422434  T
Q  127 ccttgcattttctcatgagcctcgtcaattcttctaacacaactgacctgtgtcttcttgttttcaagctctttacagcactcatcaacatatctcttta 226  Q
    || ||||||||||  |  || || | |||||||| ||||  ||| |  |   | ||||| ||||| |||||||| |||||||  |||| || ||||||||    
T  39422435 ccctgcattttcttgtatgcttccttaattcttccaacatcactaatttcctttttcttattttccagctctttgcagcacttctcaatatctctcttta 39422534  T
Q  227 tggactgcaat 237  Q
    |||||||||||    
T  39422535 tggactgcaat 39422545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 39129549 - 39129495
Alignment:
Q  187 ttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctct 241  Q
    ||||||||||||||  ||||||| |||| || |||||||||||||||||||||||    
T  39129549 ttttcaagctctttggagcactcctcaatatctctctttatggactgcaatctct 39129495  T

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Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 39427514 - 39427592
Alignment:
Q  4 ttgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagct 82  Q
    |||||||||  ||||||| | ||||||||  |||| || ||||||||||||||||||||||| | ||||||| ||||||    
T  39427514 ttgacttgacgaagttctgtttcttttgttctgagttcctgcttgcgctctccaatcaagtcattcatcaaacagagct 39427592  T

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Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 44896192 - 44896248
Alignment:
Q  7 acttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaag 63  Q
    |||||||||||||||||||||||   |  |||||||| |||||||||||||||||||    
T  44896192 acttgattaagttctatctctttcaccgcgagctctttcttgcgctctccaatcaag 44896248  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 39399012 - 39399073
Alignment:
Q  180 cttcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctct 241  Q
    |||||| ||| |||| ||||| ||||| || |||| || |||||||||||||||||||||||    
T  39399012 cttcttttttccaagttctttccagcagtcttcaatatctctctttatggactgcaatctct 39399073  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 27154993 - 27155041
Alignment:
Q  191 caagctctttacagcactcatcaacatatctctttatggactgcaatct 239  Q
    ||||||||||  ||||||| |||| || |||||||||||||||||||||    
T  27154993 caagctctttggagcactcctcaatatctctctttatggactgcaatct 27155041  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 39391674 - 39391726
Alignment:
Q  189 ttcaagctctttacagcactcatcaacatatctctttatggactgcaatctct 241  Q
    |||||||||||| |||||||| |||| || | ||||||||||| |||||||||    
T  39391674 ttcaagctctttgcagcactcttcaatatctttctttatggacagcaatctct 39391726  T

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Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 240
Target Start/End: Complemental strand, 19806890 - 19806655
Alignment:
Q  5 tgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttcccttccttcactacaaaatc 104  Q
    ||||||||| |||||| | |||||||||||| || |||| ||||||||||||||||||||| |||||||||  ||||| |||||||||  ||||||||||    
T  19806890 tgacttgatgaagttccaactcttttgtctttagttctttcttgcgctctccaatcaagtcctccatcaaacggagctgcccttcctttgctacaaaatc 19806791  T
Q  105 cttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaacacaactgacctgtgtcttcttgttttcaagctctttacag 204  Q
    ||| | |||||  | | |||  || ||||||||||   |||| | || |||||| | |||| |||| |  |   | ||||| |||||||| ||||  |||    
T  19806790 cttgacacatttgttagtttccccctgcattttcttgcgagctttgttaattctcccaacataactaatttcctttttcttattttcaagatcttcgcag 19806691  T
Q  205 cactcatcaacatatctctttatggactgcaatctc 240  Q
    || || |||| || ||||||||||||||||||||||    
T  19806690 caatcctcaatatctctctttatggactgcaatctc 19806655  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 17059089 - 17058856
Alignment:
Q  5 tgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttcccttccttcactacaaaatc 104  Q
    ||||||||  ||||||| |||||||||||  ||| |||||||||||||||||||||||||| ||||| | | |||| |||||||||||  ||| ||| ||    
T  17059089 tgacttgacgaagttctctctcttttgtcacgagttcttgcttgcgctctccaatcaagtcctccatgagagagagtttcccttcctttgctaaaaattc 17058990  T
Q  105 cttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaacacaactgacctgtgtcttcttgttttcaagctctttacag 204  Q
    |||   |  ||||| || |||| |  |||||||||  |||   |||| |||||| | ||||||||| || |||||||| || |||| |||||| |   ||    
T  17058989 cttgtgaatttctttaactttttccagcattttctggtgaatttcgttaattctacgaacacaactaacttgtgtctttttatttttaagctcatagtag 17058890  T
Q  205 cactcatcaacatatctctttatggactgcaatc 238  Q
    |||| ||||| || ||||||||| ||||||||||    
T  17058889 cacttatcaatatctctctttatagactgcaatc 17058856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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