View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0291_high_1 (Length: 576)
Name: NF0291_high_1
Description: NF0291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0291_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 139; Significance: 2e-72; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 262 - 496
Target Start/End: Complemental strand, 40278409 - 40278179
Alignment:
| Q |
262 |
tggtgccatatagcctggacctattgatgtattggtccatactggaccaatttttcccacca-tagattaggctatcataccaaatcttaaacatggtca |
360 |
Q |
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| T |
40278409 |
tggtgccgtatagcctggacctattgatgtattggtccatactggaccaatttttcccaccattggattaggctatcctacctaatctt-aacatggtca |
40278311 |
T |
|
| Q |
361 |
tctacaccaaatataataatctttcaactcta--tctttcgtttctctctctttctccggtatcactagcaccaagtttatttattattattgtgtattc |
458 |
Q |
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||| |||||||| ||| ||||||||||||| ||| |||||||||||||||||||| |||||||| ||||||||||| | |||||||||||||||| |
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| T |
40278310 |
tctgcaccaaat---atagtctttcaactctatctctctcgtttctctctctttctccagtatcactggcaccaagtttgt---ttattattgtgtattc |
40278217 |
T |
|
| Q |
459 |
caatttttggatttgggtggtgattgtgttcatttaca |
496 |
Q |
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||| |||||||||||||||||||||||||||||||||| |
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| T |
40278216 |
caacttttggatttgggtggtgattgtgttcatttaca |
40278179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 47724249 - 47724151
Alignment:
| Q |
15 |
atctttgtatcttgagaaagtgtacattggtattcaatcaattcaatgagttacaccaaactgctcttgtttttggtttacctgtacataatgtaattc |
113 |
Q |
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| T |
47724249 |
atctttttatcttgagaaagtgtacattggtattcaatcaattgaatgagttacaccaaactgctcttgtttttggtttacctgtacataatgtaattc |
47724151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 191 - 249
Target Start/End: Complemental strand, 47724096 - 47724038
Alignment:
| Q |
191 |
acagtgatacataaacactctgtatgtattccctaacacttattattattaaacacctt |
249 |
Q |
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| T |
47724096 |
acagtaatacataaacactctgtatgtattccctaacacttattattattaaacacctt |
47724038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 1e-64; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 263 - 496
Target Start/End: Complemental strand, 34457254 - 34457025
Alignment:
| Q |
263 |
ggtgccatatagcctggacctattgatgtattggtccatactggaccaatttttcccacca-tagattaggctatcataccaaatcttaaacatggtcat |
361 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||| ||| || ||||||||||| |
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| T |
34457254 |
ggtgccgtatagcctagacctattgatgtattggtccatactggaccaatttttcccaccattggattaggctatcctacctaat-tttaacatggtcat |
34457156 |
T |
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| Q |
362 |
ctacaccaaatataataatctttcaactcta--tctttcgtttctctctctttctccggtatcactagcaccaagtttatttattattattgtgtattcc |
459 |
Q |
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| T |
34457155 |
ctgcaccaaat---atagtctttcaattctatctctctcgtttctctctctttctccagtatcaccagcaccaagtttgt---ttattattgtgtattcc |
34457062 |
T |
|
| Q |
460 |
aatttttggatttgggtggtgattgtgttcatttaca |
496 |
Q |
| |
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| T |
34457061 |
aacttttggatttgggtggtgattgtgttcatttaca |
34457025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 324
Target Start/End: Original strand, 38582148 - 38582207
Alignment:
| Q |
265 |
tgccatatagcctggacctattgatgtattggtccatactggaccaatttttcccaccat |
324 |
Q |
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| T |
38582148 |
tgccatttagcttggacccattgagatattggtccatgatggaccaatttttcccaccat |
38582207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 316
Target Start/End: Complemental strand, 49251498 - 49251445
Alignment:
| Q |
263 |
ggtgccatatagcctggacctattgatgtattggtccatactggaccaattttt |
316 |
Q |
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|||||||| |||| |||||||||||| || ||||||||| ||||||||||||| |
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|
| T |
49251498 |
ggtgccatttagcttggacctattgaagttttggtccatgatggaccaattttt |
49251445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 316
Target Start/End: Complemental strand, 44658340 - 44658286
Alignment:
| Q |
262 |
tggtgccatatagcctggacctattgatgtattggtccatactggaccaattttt |
316 |
Q |
| |
|
||||||||| |||| |||||||||||| || |||||||||| ||||||||||||| |
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|
| T |
44658340 |
tggtgccatttagcttggacctattgaagttttggtccataatggaccaattttt |
44658286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 25376289 - 25376339
Alignment:
| Q |
261 |
atggtgccatatagcctggacctattgatgtattggtccatactggaccaa |
311 |
Q |
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|||||||||| |||| ||||| || ||||||||||||||||||||||||| |
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| T |
25376289 |
atggtgccatttagcatggactcatagatgtattggtccatactggaccaa |
25376339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 316
Target Start/End: Complemental strand, 44827682 - 44827629
Alignment:
| Q |
263 |
ggtgccatatagcctggacctattgatgtattggtccatactggaccaattttt |
316 |
Q |
| |
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|||| ||| |||| |||||||||||| | ||||||||||| ||||||||||||| |
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| T |
44827682 |
ggtggcatttagcatggacctattgaagaattggtccataatggaccaattttt |
44827629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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