View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0291_high_5 (Length: 374)

Name: NF0291_high_5
Description: NF0291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0291_high_5
NF0291_high_5
[»] chr5 (2 HSPs)
chr5 (1-287)||(17783670-17783956)
chr5 (161-212)||(30970755-30970806)
[»] chr8 (3 HSPs)
chr8 (155-250)||(34391061-34391156)
chr8 (158-243)||(6429449-6429534)
chr8 (187-278)||(30869734-30869825)
[»] chr7 (2 HSPs)
chr7 (182-281)||(22341119-22341218)
chr7 (215-281)||(5873644-5873710)
[»] chr4 (1 HSPs)
chr4 (161-277)||(23971594-23971710)
[»] chr1 (1 HSPs)
chr1 (155-245)||(22059875-22059965)
[»] chr3 (2 HSPs)
chr3 (163-243)||(7808387-7808467)
chr3 (155-239)||(26255460-26255544)


Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 17783670 - 17783956
Alignment:
Q  1 ctagaacacctatgtattctgctccaaaataatgtgagcattatgagatctctacaaggaccacataataattttccacgttnnnnnnnttcaacctcgn 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||       ||||||||||     
T  17783670 ctagaacacctatgtattctgctccaaaataatgtgagcattatgagatctctacaagaaccacataatgattttccacgttaaaaaaattcaacctcgt 17783769  T
Q  101 nnnnnnnatgcacctaattctaacataatactaagaagatgtagcgatgactacatctggaggtaaaacaaactcccacctcaactacctaagcacatga 200  Q
            ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17783770 tttttttctgcacctaattctaatataatactaagaagatgcagcgatgactacatctggaggtaaaacaaactcccacctcaactacctaagcacatga 17783869  T
Q  201 taccacatctgatctaaaaaatgaaatctaccaaaaaggtgactagccgattcaagatgctcattacagaaaacacaagaattatct 287  Q
    ||||||||| || ||||||||||| ||||| |||||| ||||| |||||||||| |||||||||||||||||||||||||| |||||    
T  17783870 taccacatccgacctaaaaaatgacatctagcaaaaaagtgacaagccgattcatgatgctcattacagaaaacacaagaagtatct 17783956  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 30970755 - 30970806
Alignment:
Q  161 aggtaaaacaaactcccacctcaactacctaagcacatgataccacatctga 212  Q
    ||||||||| |||||||||| ||||||||||| |||||||||| ||| ||||    
T  30970755 aggtaaaactaactcccaccccaactacctaaacacatgatactacacctga 30970806  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 250
Target Start/End: Complemental strand, 34391156 - 34391061
Alignment:
Q  155 atctggaggtaaaacaaactcccacctcaactacctaagcacatgataccacatctgatctaaaaaatgaaatctaccaaaaaggtgactagccga 250  Q
    ||||| |||||||||||||||||||| |||| ||||||||||||||||||||| ||   |||||||| || | ||| |||||||||||||| ||||    
T  34391156 atctgaaggtaaaacaaactcccaccccaaccacctaagcacatgataccacacctagcctaaaaaaggacaactaacaaaaaggtgactaaccga 34391061  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 6429449 - 6429534
Alignment:
Q  158 tggaggtaaaacaaactcccacctcaactacctaagcacatgataccacatctgatctaaaaaatgaaatctaccaaaaaggtgac 243  Q
    |||||||||||||||||| | || |||| ||||||||||| ||||||||| ||||  |||||||||| ||||| ||||||||||||    
T  6429449 tggaggtaaaacaaactctccccccaaccacctaagcacacgataccacacctgacttaaaaaatgacatctagcaaaaaggtgac 6429534  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 278
Target Start/End: Complemental strand, 30869825 - 30869734
Alignment:
Q  187 acctaagcacatgataccacatctgatctaaaaaatgaaatctaccaaaaaggtgactagccgattcaagatgctcattacagaaaacacaa 278  Q
    |||||| |||||| ||||||| |||| ||||||| ||| ||||| |||||||||||| |||| | || | |  ||||||||| |||||||||    
T  30869825 acctaaacacatgctaccacacctgacctaaaaactgacatctaacaaaaaggtgacaagccaactctacactctcattacaaaaaacacaa 30869734  T

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Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 182 - 281
Target Start/End: Complemental strand, 22341218 - 22341119
Alignment:
Q  182 caactacctaagcacatgataccacatctgatctaaaaaatgaaatctaccaaaaaggtgactagccgattcaagatgctcattacagaaaacacaagaa 281  Q
    ||||||| |||||||||||||||| | ||||||||||||| || ||||| |||||| ||||| | |||| || | | |||||||| ||||||||||||||    
T  22341218 caactacataagcacatgataccatacctgatctaaaaaaggacatctaacaaaaatgtgacaacccgactctataggctcattatagaaaacacaagaa 22341119  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 281
Target Start/End: Original strand, 5873644 - 5873710
Alignment:
Q  215 taaaaaatgaaatctaccaaaaaggtgactagccgattcaagatgctcattacagaaaacacaagaa 281  Q
    |||||||||| ||||| ||||||||||| ||| ||| || |||  ||||||| ||||||||||||||    
T  5873644 taaaaaatgacatctaacaaaaaggtgattagtcgactctagaaactcattatagaaaacacaagaa 5873710  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 161 - 277
Target Start/End: Complemental strand, 23971710 - 23971594
Alignment:
Q  161 aggtaaaacaaactcccacctcaactacctaagcacatgataccacatctgatctaaaaaatgaaatctaccaaaaaggtgactagccgattcaagatgc 260  Q
    ||||||||||||||| |||| ||||  || || |||||||||||||| ||| |||||||||||  ||||| |||||| ||||| | || | |  | ||||    
T  23971710 aggtaaaacaaactctcaccccaacctccaaaacacatgataccacacctggtctaaaaaatggtatctaacaaaaacgtgacaaaccaactatacatgc 23971611  T
Q  261 tcattacagaaaacaca 277  Q
    |||||||||||||||||    
T  23971610 tcattacagaaaacaca 23971594  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 245
Target Start/End: Complemental strand, 22059965 - 22059875
Alignment:
Q  155 atctggaggtaaaacaaactcccacctcaactacctaagcacatgataccacatctgatctaaaaaatgaaatctaccaaaaaggtgacta 245  Q
    ||||| |||||||| |||||| |||| |||| ||| || |||||||||||||| ||   || |||||||| ||||| ||||||||||||||    
T  22059965 atctgaaggtaaaataaactctcaccccaaccacccaaacacatgataccacacctcgccttaaaaatgacatctaacaaaaaggtgacta 22059875  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 7808387 - 7808467
Alignment:
Q  163 gtaaaacaaactcccacctcaactacctaagcacatgataccacatctgatctaaaaaatgaaatctaccaaaaaggtgac 243  Q
    |||||||||| ||||||| |||||| |||| |||||||||| |||  |   |||||||| || ||||||||||||||||||    
T  7808387 gtaaaacaaattcccaccccaactatctaaacacatgatacaacacttagcctaaaaaaggacatctaccaaaaaggtgac 7808467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 239
Target Start/End: Original strand, 26255460 - 26255544
Alignment:
Q  155 atctggaggtaaaacaaactcccacctcaactacctaagcacatgataccacatctgatctaaaaaatgaaatctaccaaaaagg 239  Q
    ||||| ||||||||||||| |||||| |||| | |||| ||||||||||||||  ||| | |||||| || ||||| ||||||||    
T  26255460 atctgaaggtaaaacaaacacccaccccaaccatctaaacacatgataccacacttgacccaaaaaaggacatctaacaaaaagg 26255544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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