View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0291_high_6 (Length: 312)
Name: NF0291_high_6
Description: NF0291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0291_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 68 - 264
Target Start/End: Original strand, 27777961 - 27778157
Alignment:
| Q |
68 |
gattatctaacctgcagtagttgtttggcaaggtcgatggctataagtccagcactgcaacccataccacttaaattatagcacaaaatttgatgcttaa |
167 |
Q |
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| T |
27777961 |
gattatctaacctgcagtagttgtttggcaaggtcgatggctataagtccagcactgcaacccataccacttaaattatagcacaaaatttgatgcttaa |
27778060 |
T |
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| Q |
168 |
gtttgtaatggttaataaccattgcactaagagaaggtgaaggattgaaaatgcaacaatttgttataagaatttcaatatcctcaaccttcatttt |
264 |
Q |
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| T |
27778061 |
gtctgtaatggttaataaccattgcactaagagaaggtgaaggattgaaaatacaacaatttgttataagaatttcaatatcctcaaccttcatttt |
27778157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 69 - 264
Target Start/End: Original strand, 19747904 - 19748099
Alignment:
| Q |
69 |
attatctaacctgcagtagttgtttggcaaggtcgatggctataagtccagcactgcaacccataccacttaaattatagcacaaaatttgatgcttaag |
168 |
Q |
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| T |
19747904 |
attatctaacctgtaagagttgtttagcaaggtcgatggctatgagtcctgcgctacaacccataccacttaaattatagcacaaaattgtatgcttaag |
19748003 |
T |
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| Q |
169 |
tttgtaatggttaataaccattgcactaagagaaggtgaaggattgaaaatgcaacaatttgttataagaatttcaatatcctcaaccttcatttt |
264 |
Q |
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| T |
19748004 |
tttgaaatggttgacaaccatagcactaagagaaggtacaggattgaatatactacaatttgttataagaatttctatatcctcagccttcatttt |
19748099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 69 - 264
Target Start/End: Complemental strand, 19791902 - 19791707
Alignment:
| Q |
69 |
attatctaacctgcagtagttgtttggcaaggtcgatggctataagtccagcactgcaacccataccacttaaattatagcacaaaatttgatgcttaag |
168 |
Q |
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| T |
19791902 |
attatctaacctgtaagagttgtttagcaaggtcgatggctatgagtcctgcgctacaacccataccacttaaattatagcacaaaattgtatgcttaag |
19791803 |
T |
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| Q |
169 |
tttgtaatggttaataaccattgcactaagagaaggtgaaggattgaaaatgcaacaatttgttataagaatttcaatatcctcaaccttcatttt |
264 |
Q |
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| T |
19791802 |
tttgaaatggttgacaaccatagcactaagagaaggtacaggattgaatatactacaatttgttataagaatttctatatcctcagccttcatttt |
19791707 |
T |
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