View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0291_low_2 (Length: 511)
Name: NF0291_low_2
Description: NF0291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0291_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 87 - 493
Target Start/End: Complemental strand, 47724560 - 47724151
Alignment:
| Q |
87 |
gtatttaatgtaaaatttggacgaaattcaccaaccttttaacgaaactttctc---ttatattttgaattggagtgagtatgatgttgttttttgttga |
183 |
Q |
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| T |
47724560 |
gtatttaatgtaaaatttggatgaaattcaccaaccttttaacgaaactttctcctcttatattttgaattggagtgagtatgatgttgttttttgttga |
47724461 |
T |
|
| Q |
184 |
tgagattcctcctttatttgcattggagccttgtctttgttctgttatgctaaatgtaaaatttaactaacgtttttgtcatgttcaagaatcattatgc |
283 |
Q |
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|| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47724460 |
tggggttcctcctttatttgcattggagccttgtctttgttctgatatgctaaatgtaaaatttaactaacgtttttgtcatgttcaagaatcattatgc |
47724361 |
T |
|
| Q |
284 |
atatataagcataaggcggaagaagggaaggatacatgctatgctaggaatgttttctcggatcgagtagtattgagagtagatttcctctcatcctcnn |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47724360 |
atatataagcataaggcggaagaagggaaggatacatgctatggtaggaatgtcttctcggatcgagtagtattgagagtagatttcctctcatcctctt |
47724261 |
T |
|
| Q |
384 |
nnnnnnnnnnnnnnnnnnnatcttgagaaagtgtacattggtattcaatcaattcaatgagttacaccaaactgctcttgtttttggtttacctgtacat |
483 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47724260 |
ttttcatttttatctttttatcttgagaaagtgtacattggtattcaatcaattgaatgagttacaccaaactgctcttgtttttggtttacctgtacat |
47724161 |
T |
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| Q |
484 |
aatgtaattc |
493 |
Q |
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|||||||||| |
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| T |
47724160 |
aatgtaattc |
47724151 |
T |
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