View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0291_low_9 (Length: 300)
Name: NF0291_low_9
Description: NF0291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0291_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 28742733 - 28742480
Alignment:
| Q |
18 |
cacagatacatataatgttatcattttcatccagagaccatattatcgttcatctttttgtaacttactgatttccctgttaaataaaatatcactaaac |
117 |
Q |
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| T |
28742733 |
cacagatacatataatgttatcattttcatccagagaccatattatcgttcatctttttgtaacttactgatttccctgttaaataaaatatcactaaac |
28742634 |
T |
|
| Q |
118 |
tcaaactgaatgatgcaagtcaagggagctgctactcagtgttgtcaattgcgaatcgcaaaaatagattttcattctaattccactacacaataagtgt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28742633 |
tcaaactgaatgatgcaagtcaagggagctgctactcagtgttgtcaattgcgaatcgcaaaaatagattttcattcaaattccactacacaataagtgt |
28742534 |
T |
|
| Q |
218 |
tataccgtcattatagccgctatttgatactgttatgtactaaatagtgtaatg |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28742533 |
tataccgtcattatagccgctatttgatactgttatgtactaaatagtgtaatg |
28742480 |
T |
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