View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0292_high_10 (Length: 280)
Name: NF0292_high_10
Description: NF0292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0292_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 30 - 274
Target Start/End: Complemental strand, 43418412 - 43418168
Alignment:
| Q |
30 |
gatcaatgcatttggataaaattttgatggacacaacaaaagttgggtttagttggcaatgatagatagctgctttcaataaaatcagtggatactttct |
129 |
Q |
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| T |
43418412 |
gatcaatgcatttggataaaattttgatggacacaacaaaagttgggtttagtgggcaatgatagatagctgctttcaataaaatcagtggatactttct |
43418313 |
T |
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| Q |
130 |
gaagatgatgattatgagtagaagaattgatgctgccagtgccagaaaagaagaataacacataaatgtcacttgttagtgagaaagcagcctcaactaa |
229 |
Q |
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| T |
43418312 |
gaagatgatgattatgagtagaagaattgatgctgccagtgccagaaaagaagaataacacataaatgtcacttgttagtgagaaagcagcctcaactaa |
43418213 |
T |
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| Q |
230 |
ctcctccatgcatgaatgcatcaattcccacaggcttcatgtcag |
274 |
Q |
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| T |
43418212 |
ctcctccatgcatgaatgcatcaattcccacaggcttcgtgtcag |
43418168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 38 - 230
Target Start/End: Complemental strand, 43406519 - 43406330
Alignment:
| Q |
38 |
catttggataaaattttgatggacacaacaaaagttgggtttagttggcaatgatagatagctgctttcaataaaatcagtggatactttctgaagatga |
137 |
Q |
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| T |
43406519 |
catttagataaaattttggcggccataacaaaagttgggattagtgggcaatcatagctagctgctttcaataaaatcagtggattctatgtgaagatga |
43406420 |
T |
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| Q |
138 |
tgattatgagtagaagaattgatgctgccagtgccagaaaagaagaataacacataaatgtcacttgttagtgagaaagcagcctcaactaac |
230 |
Q |
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| T |
43406419 |
tgat---gagtagaagaattgatgctgccaatgcccgaaaagaagaataacacataaatgtcacttgtgaatgagaaaacaacctcgactaac |
43406330 |
T |
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