View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0292_high_11 (Length: 251)
Name: NF0292_high_11
Description: NF0292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0292_high_11 |
 | |
|
| [»] chr5 (10 HSPs) |
| |
|
| [»] chr6 (3 HSPs) |
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| [»] chr4 (8 HSPs) |
| |
|
| [»] scaffold0040 (2 HSPs) |
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| [»] chr7 (4 HSPs) |
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| [»] chr3 (8 HSPs) |
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| [»] scaffold0233 (1 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] scaffold0028 (2 HSPs) |
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| [»] scaffold0482 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 9e-88; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 22488666 - 22488896
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaagcaacaatgctttcaaagccaggaaatttagaa |
119 |
Q |
| |
|
||||||||||||||| |||| |||||| ||||| |||||||||||| ||| ||||| | |||||||||||||| |||||||||||||||| || | |||| |
|
|
| T |
22488666 |
gacatcatcagcattaggcagcaagtt-atacagctcattacagctggttatctcatgtgcaagcaagcaacagtgctttcaaagccaggcaaatcagaa |
22488764 |
T |
|
| Q |
120 |
agaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
219 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22488765 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttct |
22488864 |
T |
|
| Q |
220 |
cccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |
|
|
| T |
22488865 |
cccttgatcaccaagacactcctcacctataa |
22488896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 4635442 - 4635672
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaagcaacaatgctttcaaagccaggaaatttagaa |
119 |
Q |
| |
|
||||||||||||| || |||||||||| ||||||||||||||| || |||||||||||||||||||||||| | |||||||||||||||| || | |||| |
|
|
| T |
4635442 |
gacatcatcagcagtgcgcaacaagtt-atacaactcattacaactggttctctcacgcgcaagcaagcaatagtgctttcaaagccaggcaaatcagaa |
4635540 |
T |
|
| Q |
120 |
agaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
219 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
4635541 |
agaacattttgagaacattctagctattttaaagaagaaaagaaaaatcaattgagactttggacaactatcaaaaacgcatccaacagctctattttct |
4635640 |
T |
|
| Q |
220 |
cccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |
|
|
| T |
4635641 |
cccttgatcaccaagacactcctcacctataa |
4635672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 24412307 - 24412538
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaa-gcaacaatgctttcaaagccaggaaatttaga |
118 |
Q |
| |
|
||||||||||| | ||||| |||||| ||||| ||||| |||||| ||| ||||| |||||||||| |||||| ||||||| ||| |||| || | ||| |
|
|
| T |
24412307 |
gacatcatcagaagtgggctgcaagtt-atacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcaga |
24412405 |
T |
|
| Q |
119 |
aagaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttc |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24412406 |
aagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttc |
24412505 |
T |
|
| Q |
219 |
tcccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| |
|
|
| T |
24412506 |
tcccttggtcaccaagacactcctcacctataa |
24412538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 30445538 - 30445307
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaa-gcaacaatgctttcaaagccaggaaatttaga |
118 |
Q |
| |
|
||||||||||| | ||||| |||||| ||||| |||||||||||| ||| ||||| |||||||||| |||||| ||||||||||| |||| || | ||| |
|
|
| T |
30445538 |
gacatcatcagaagtgggctgcaagtt-atacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcaga |
30445440 |
T |
|
| Q |
119 |
aagaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttc |
218 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30445439 |
aagaacattctgagaacgttctggctatttttaagaagaaaagagaaatcaaatgagactttggacagctatcaaaaacgtgtccaacagctctattttc |
30445340 |
T |
|
| Q |
219 |
tcccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| |
|
|
| T |
30445339 |
tcccttggtcaccaagacactcctcacctataa |
30445307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 30454910 - 30454679
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaa-gcaacaatgctttcaaagccaggaaatttaga |
118 |
Q |
| |
|
||||||||||| | ||||| |||||| ||||| |||||||||||| ||| ||||| |||||||||| |||||| ||||||||||| |||| || | ||| |
|
|
| T |
30454910 |
gacatcatcagaagtgggctgcaagtt-atacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcaga |
30454812 |
T |
|
| Q |
119 |
aagaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttc |
218 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30454811 |
aagaacattctgagaacgttctggctatttttaagaagaaaagagaaatcaaatgagactttggacagctatcaaaaacgtgtccaacagctctattttc |
30454712 |
T |
|
| Q |
219 |
tcccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| |
|
|
| T |
30454711 |
tcccttggtcaccaagacactcctcacctataa |
30454679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 30459968 - 30459737
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaa-gcaacaatgctttcaaagccaggaaatttaga |
118 |
Q |
| |
|
||||||||||| | ||||| |||||| ||||| |||||||||||| ||| ||||| |||||||||| |||||| ||||||||||| |||| || | ||| |
|
|
| T |
30459968 |
gacatcatcagaagtgggctgcaagtt-atacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcaga |
30459870 |
T |
|
| Q |
119 |
aagaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttc |
218 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30459869 |
aagaacattctgagaacgttctggctatttttaagaagaaaagagaaatcaaatgagactttggacagctatcaaaaacgtgtccaacagctctattttc |
30459770 |
T |
|
| Q |
219 |
tcccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| |
|
|
| T |
30459769 |
tcccttggtcaccaagacactcctcacctataa |
30459737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 54 - 251
Target Start/End: Original strand, 18568550 - 18568748
Alignment:
| Q |
54 |
ctcattacagctagttctctcacgcgcaagcaa-gcaacaatgctttcaaagccaggaaatttagaaagaacattctgagaacattctggctattttaaa |
152 |
Q |
| |
|
|||||||||||| ||| ||||| |||||||||| |||||| ||||||||||| |||| || | |||||||||||||||||||| ||||||||||||| || |
|
|
| T |
18568550 |
ctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcagaaagaacattctgagaacgttctggctatttttaa |
18568649 |
T |
|
| Q |
153 |
gaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttctcccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
18568650 |
gaagaaaagagaaatcaaatgagactttggacagctatcaaaaacgtgtccaacagctctattttctcccttggtcaccaagacactcctcacctataa |
18568748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 131 - 251
Target Start/End: Original strand, 24421867 - 24421987
Alignment:
| Q |
131 |
agaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttctcccttgatcac |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| |
|
|
| T |
24421867 |
agaacattctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccagcagctctattttctcccttggtcac |
24421966 |
T |
|
| Q |
231 |
aaagacactcctcacctataa |
251 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
24421967 |
caagacactcctcacctataa |
24421987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 29 - 223
Target Start/End: Complemental strand, 24279006 - 24278813
Alignment:
| Q |
29 |
agcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaagcaacaatgctttcaaagccaggaaatttagaaagaacattc |
128 |
Q |
| |
|
||||||||||||||||| | ||| |||||||| || || |||||| || ||||||||||||||||| ||||| ||| || | ||| | |||||| |
|
|
| T |
24279006 |
agcattgggcaacaagt--aaacagttcattacaactggtactctcatgcacaagcaagcaacaatgcaagcaaagttaggcaaatcagacacaacatt- |
24278910 |
T |
|
| Q |
129 |
tgagaacattctggctatttt-aaagaagaaaagagaaatctattgagactttggacagctatca-aaaacgcgtccaacagctctattttctccct |
223 |
Q |
| |
|
||||||| ||||||||||||| ||||||||| ||||||||| | ||||| ||||||||||||||| |||||| |||||||| ||||||||||||||| |
|
|
| T |
24278909 |
tgagaacgttctggctatttttaaagaagaagagagaaatcaactgagattttggacagctatcaaaaaacgtgtccaacaactctattttctccct |
24278813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 29 - 223
Target Start/End: Original strand, 24383208 - 24383401
Alignment:
| Q |
29 |
agcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaagcaacaatgctttcaaagccaggaaatttagaaagaacattc |
128 |
Q |
| |
|
||||||||||||||||| | ||| |||||||| || || |||||| || ||||||||||||||||| ||||| ||| || | ||| | |||||| |
|
|
| T |
24383208 |
agcattgggcaacaagt--aaacagttcattacaactggtactctcatgcacaagcaagcaacaatgcaagcaaagttaggcaaatcagacacaacatt- |
24383304 |
T |
|
| Q |
129 |
tgagaacattctggctatttt-aaagaagaaaagagaaatctattgagactttggacagctatc-aaaaacgcgtccaacagctctattttctccct |
223 |
Q |
| |
|
||||||| ||||||||||||| ||||||||| ||||||||| | ||||| |||||||||||||| ||||||| |||||||| ||||||||||||||| |
|
|
| T |
24383305 |
tgagaacgttctggctatttttaaagaagaagagagaaatcaactgagattttggacagctatcaaaaaacgtgtccaacaactctattttctccct |
24383401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 23896325 - 23896094
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaa-gcaacaatgctttcaaagccaggaaatttaga |
118 |
Q |
| |
|
||||||||||| | |||||| |||||| ||||| |||||||||||| ||| ||||| |||||||||| |||||| |||||||||||||||| || | ||| |
|
|
| T |
23896325 |
gacatcatcagaagtgggcagcaagtt-atacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagccaggcaaatcaga |
23896227 |
T |
|
| Q |
119 |
aagaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttc |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
23896226 |
aagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacaactatcaaaaacgtgtccaacagctctattttc |
23896127 |
T |
|
| Q |
219 |
tcccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
23896126 |
tcccttgatcaccaagacactcctcacctataa |
23896094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 18420031 - 18420262
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaa-gcaacaatgctttcaaagccaggaaatttaga |
118 |
Q |
| |
|
||||||||||| | ||||| |||||| ||||| ||||| |||||| ||| ||||| |||||||||| |||||| ||||||| ||| |||| || | ||| |
|
|
| T |
18420031 |
gacatcatcagaagtgggctgcaagtt-atacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcaga |
18420129 |
T |
|
| Q |
119 |
aagaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttc |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18420130 |
aagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttc |
18420229 |
T |
|
| Q |
219 |
tcccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| |
|
|
| T |
18420230 |
tcccttggtcaccaagacactcctcacctataa |
18420262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 120 - 251
Target Start/End: Original strand, 14101770 - 14101901
Alignment:
| Q |
120 |
agaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
219 |
Q |
| |
|
|||||||||||||||| |||| | |||||| ||||||||| |||||| ||||| |||||||||||| |||||||| ||||||| |||||||||| |
|
|
| T |
14101770 |
agaacattctgagaacgttcttcccgttttaatgaagaaaagtgaaatcaattgaagctttggacagctgccaaaaacgtatccaacaactctattttca |
14101869 |
T |
|
| Q |
220 |
cccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
| ||||||||| ||| |||||||||||||||| |
|
|
| T |
14101870 |
ctcttgatcaccaaggcactcctcacctataa |
14101901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 15843605 - 15843375
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaagcaacaatgctttcaaagccaggaaatttagaa |
119 |
Q |
| |
|
|||||||||||||||||||| ||| || ||||| |||||||||||| ||| ||||| |||||||||||||||| |||||||||||||||| || | |||| |
|
|
| T |
15843605 |
gacatcatcagcattgggcagcaaatt-atacagctcattacagctggttatctcatgcgcaagcaagcaacagtgctttcaaagccaggcaaatcagaa |
15843507 |
T |
|
| Q |
120 |
agaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
219 |
Q |
| |
|
|||||||| ||||||| || ||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
15843506 |
agaacattatgagaacgttatggctattttaaagaagaaaagagaaatcaattgagactttgaacagctataaaaaacgtgtccaacagctctattttct |
15843407 |
T |
|
| Q |
220 |
cccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |
|
|
| T |
15843406 |
cccttgatcaccaagacactcctcacctataa |
15843375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 37058566 - 37058797
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaag-caacaatgctttcaaagccaggaaatttaga |
118 |
Q |
| |
|
||||||||||| | |||||| ||||| ||||| |||||||||||| ||| ||||| |||||||||| ||||| |||||||||||||||| || | ||| |
|
|
| T |
37058566 |
gacatcatcagaagtgggcacaaagtt-atacagctcattacagctggttatctcatgcgcaagcaaaacaacagtgctttcaaagccaggcaaatcaga |
37058664 |
T |
|
| Q |
119 |
aagaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttc |
218 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
37058665 |
aagaacattttgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacaactctattttc |
37058764 |
T |
|
| Q |
219 |
tcccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
37058765 |
tcccttgatcaccaagacactcctcacctataa |
37058797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 3242996 - 3242765
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaa-gcaacaatgctttcaaagccaggaaatttaga |
118 |
Q |
| |
|
||||||||||| | ||||| |||||| ||||| ||||| |||||| ||| ||||| |||||||||| |||||| ||||||| ||| |||| || | ||| |
|
|
| T |
3242996 |
gacatcatcagaagtgggctgcaagtt-atacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcaga |
3242898 |
T |
|
| Q |
119 |
aagaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttc |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3242897 |
aagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttc |
3242798 |
T |
|
| Q |
219 |
tcccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| |
|
|
| T |
3242797 |
tcccttggtcaccaagacactcctcacctataa |
3242765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 3917545 - 3917776
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaa-gcaacaatgctttcaaagccaggaaatttaga |
118 |
Q |
| |
|
||||||||||| | ||||| |||||| ||||| ||||| |||||| ||| ||||| |||||||||| |||||| ||||||| ||| |||| || | ||| |
|
|
| T |
3917545 |
gacatcatcagaagtgggctgcaagtt-atacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcaga |
3917643 |
T |
|
| Q |
119 |
aagaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttc |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3917644 |
aagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttc |
3917743 |
T |
|
| Q |
219 |
tcccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| |
|
|
| T |
3917744 |
tcccttggtcaccaagacactcctcacctataa |
3917776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 26811987 - 26812218
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaa-gcaacaatgctttcaaagccaggaaatttaga |
118 |
Q |
| |
|
||||||||||| | ||||| |||||| ||||| ||||| |||||| ||| ||||| |||||||||| |||||| ||||||| ||| |||| || | ||| |
|
|
| T |
26811987 |
gacatcatcagaagtgggctgcaagtt-atacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcaga |
26812085 |
T |
|
| Q |
119 |
aagaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttc |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26812086 |
aagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttc |
26812185 |
T |
|
| Q |
219 |
tcccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| |
|
|
| T |
26812186 |
tcccttggtcaccaagacactcctcacctataa |
26812218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 26821454 - 26821685
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaa-gcaacaatgctttcaaagccaggaaatttaga |
118 |
Q |
| |
|
||||||||||| | ||||| |||||| ||||| ||||| |||||| ||| ||||| |||||||||| |||||| ||||||| ||| |||| || | ||| |
|
|
| T |
26821454 |
gacatcatcagaagtgggctgcaagtt-atacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcaga |
26821552 |
T |
|
| Q |
119 |
aagaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttc |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26821553 |
aagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttc |
26821652 |
T |
|
| Q |
219 |
tcccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| |
|
|
| T |
26821653 |
tcccttggtcaccaagacactcctcacctataa |
26821685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 54690622 - 54690391
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaa-gcaacaatgctttcaaagccaggaaatttaga |
118 |
Q |
| |
|
||||||||||| | ||||| |||||| ||||| ||||| |||||| ||| ||||| |||||||||| |||||| ||||||| ||| |||| || | ||| |
|
|
| T |
54690622 |
gacatcatcagaagtgggctgcaagtt-atacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcaga |
54690524 |
T |
|
| Q |
119 |
aagaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttc |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
54690523 |
aagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttc |
54690424 |
T |
|
| Q |
219 |
tcccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| |
|
|
| T |
54690423 |
tcccttggtcaccaagacactcctcacctataa |
54690391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 54700053 - 54699822
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaa-gcaacaatgctttcaaagccaggaaatttaga |
118 |
Q |
| |
|
||||||||||| | ||||| |||||| ||||| ||||| |||||| ||| ||||| |||||||||| |||||| ||||||| ||| |||| || | ||| |
|
|
| T |
54700053 |
gacatcatcagaagtgggctgcaagtt-atacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcaga |
54699955 |
T |
|
| Q |
119 |
aagaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttc |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
54699954 |
aagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttc |
54699855 |
T |
|
| Q |
219 |
tcccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| |
|
|
| T |
54699854 |
tcccttggtcaccaagacactcctcacctataa |
54699822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 31516 - 31285
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaa-gcaacaatgctttcaaagccaggaaatttaga |
118 |
Q |
| |
|
||||||||||| | |||||| |||||| ||||| |||||||||||| ||| ||||| | |||||||| |||||| |||||||||||||||| || | ||| |
|
|
| T |
31516 |
gacatcatcagaagtgggcagcaagtt-atacagctcattacagctggttatctcatgtgcaagcaaagcaacagtgctttcaaagccaggcaaatcaga |
31418 |
T |
|
| Q |
119 |
aagaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttc |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31417 |
aagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttc |
31318 |
T |
|
| Q |
219 |
tcccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| |
|
|
| T |
31317 |
tcccttgttcaccaagacactcctcacctataa |
31285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 31 - 250
Target Start/End: Original strand, 9537 - 9755
Alignment:
| Q |
31 |
cattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaagcaacaatgctttcaaagccaggaaatttagaaagaacattctg |
130 |
Q |
| |
|
||||| ||||||| |||| ||||||||||| |||| ||||| |||| ||||||||||||||| || |||||| ||| || | ||| ||||||||||| |
|
|
| T |
9537 |
cattgagcaacaa-tttaaacaactcattatagctggttctttcactcgcaagcaagcaacagagcaagcaaagctaggcaaatcagacagaacattctg |
9635 |
T |
|
| Q |
131 |
agaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttctcccttgatcac |
230 |
Q |
| |
|
||||| |||| |||||||| ||||||||||| |||| | | ||||||||||||||||||||||||| | ||||| || |||||||||| ||||||||||| |
|
|
| T |
9636 |
agaacgttctagctatttttaagaagaaaagtgaaaacaaatgagactttggacagctatcaaaaatgtgtccatcaactctattttcacccttgatcac |
9735 |
T |
|
| Q |
231 |
aaagacactcctcacctata |
250 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
9736 |
caagacactcctcacctata |
9755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 4119133 - 4118902
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaa-gcaacaatgctttcaaagccaggaaatttaga |
118 |
Q |
| |
|
||||||||||| | || |||||||||| ||||| ||||||| |||| ||| ||||| |||||||||| |||||| |||||||||||||||| || | ||| |
|
|
| T |
4119133 |
gacatcatcagaagtgagcaacaagtt-atacagctcattaaagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagccaggcaaatcaga |
4119035 |
T |
|
| Q |
119 |
aagaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttc |
218 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4119034 |
aagaacattctgagaacgttttggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttc |
4118935 |
T |
|
| Q |
219 |
tcccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
4118934 |
tcccttgatcaccaagacactcctcacctataa |
4118902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 15172798 - 15173029
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaa-gcaacaatgctttcaaagccaggaaatttaga |
118 |
Q |
| |
|
||||||||||| | || ||| |||||| ||||| ||||||| |||| ||| ||||| |||||||||| |||||| |||||||||||||||| || | ||| |
|
|
| T |
15172798 |
gacatcatcagaagtgagcagcaagtt-atacagctcattatagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagccaggcaaatcaga |
15172896 |
T |
|
| Q |
119 |
aagaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttc |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15172897 |
aagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttc |
15172996 |
T |
|
| Q |
219 |
tcccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
15172997 |
tcccttgatcaccaagacactcctcacctataa |
15173029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 15202224 - 15202455
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaa-gcaacaatgctttcaaagccaggaaatttaga |
118 |
Q |
| |
|
||||||||||| | |||||| |||||| |||||||||||||||||| ||| ||||| |||||||||| |||||| |||||| |||||||| || | ||| |
|
|
| T |
15202224 |
gacatcatcagaagtgggcagcaagtt-atacaactcattacagctggttatctcatgcgcaagcaaagcaacagtgcttttaaagccagacaaatcaga |
15202322 |
T |
|
| Q |
119 |
aagaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttc |
218 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
15202323 |
aagaacattcatagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacaactctattttc |
15202422 |
T |
|
| Q |
219 |
tcccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
15202423 |
tcccttgatcaccaagacactcctcacctataa |
15202455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 7592485 - 7592716
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaa-gcaacaatgctttcaaagccaggaaatttaga |
118 |
Q |
| |
|
||||||||||| | ||||| |||||| ||||| ||||| |||||| ||| ||||| |||||||||| |||||| ||||||| ||| |||| || | ||| |
|
|
| T |
7592485 |
gacatcatcagaagtgggctgcaagtt-atacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcaga |
7592583 |
T |
|
| Q |
119 |
aagaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttc |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7592584 |
aagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttc |
7592683 |
T |
|
| Q |
219 |
tcccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| |
|
|
| T |
7592684 |
tcccttggtcaccaagacactcctcacctataa |
7592716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 38529846 - 38529615
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaagcaacaatgctttcaaagccaggaaatttagaa |
119 |
Q |
| |
|
|||||||||| |||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| |||| |||| |
|
|
| T |
38529846 |
gacatcatcaacattgggcaacaagttaa-acaactcattacagctggttctctcacgcgcaagcaagcaacagtgctttcaaagtcagacaattcagaa |
38529748 |
T |
|
| Q |
120 |
agaacattctgagaacattctggctattttaaagaag-aaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttc |
218 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||| ||||||| |||||||||||||||| |||| ||||||| |||||||| |||||||||| |
|
|
| T |
38529747 |
agaacattctgagaacggtctggctattttaaagaagaaaaaaagaaatcaattgagactttggacaactataaaaaacgtgtccaacaactctattttc |
38529648 |
T |
|
| Q |
219 |
tcccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||| |
|
|
| T |
38529647 |
tcccttgatcaccaagacactcctcgcctataa |
38529615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 28352430 - 28352199
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaa-gcaacaatgctttcaaagccaggaaatttaga |
118 |
Q |
| |
|
||||||||||| | ||||| |||||| ||||||||||| |||||| ||| ||||| |||||||||| |||||| ||||||| ||| |||| || | ||| |
|
|
| T |
28352430 |
gacatcatcagaagtgggctgcaagtt-atacaactcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcaga |
28352332 |
T |
|
| Q |
119 |
aagaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttc |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28352331 |
aagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttc |
28352232 |
T |
|
| Q |
219 |
tcccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| |
|
|
| T |
28352231 |
tcccttggtcaccaagacactcctcacctataa |
28352199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 28368362 - 28368132
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaa-gcaacaatgctttcaaagccaggaaatttaga |
118 |
Q |
| |
|
||||||||||| | ||||| |||||| ||||| ||||| |||||| ||| ||||| |||||||||| |||||| ||||||| ||| |||| || | ||| |
|
|
| T |
28368362 |
gacatcatcagaagtgggctgcaagtt-atacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcaga |
28368264 |
T |
|
| Q |
119 |
aagaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttc |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28368263 |
aagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttc |
28368164 |
T |
|
| Q |
219 |
tcccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
||||||| | || |||||||||||||||||||| |
|
|
| T |
28368163 |
tcccttggt-accaagacactcctcacctataa |
28368132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 28376180 - 28375950
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaa-gcaacaatgctttcaaagccaggaaatttaga |
118 |
Q |
| |
|
||||||||||| | ||||| |||||| ||||| ||||| |||||| ||| ||||| |||||||||| |||||| ||||||| ||| |||| || | ||| |
|
|
| T |
28376180 |
gacatcatcagaagtgggctgcaagtt-atacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcaga |
28376082 |
T |
|
| Q |
119 |
aagaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttc |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28376081 |
aagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttc |
28375982 |
T |
|
| Q |
219 |
tcccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
||||||| | || |||||||||||||||||||| |
|
|
| T |
28375981 |
tcccttggt-accaagacactcctcacctataa |
28375950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 28384002 - 28383772
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaa-gcaacaatgctttcaaagccaggaaatttaga |
118 |
Q |
| |
|
||||||||||| | ||||| |||||| ||||| ||||| |||||| ||| ||||| |||||||||| |||||| ||||||| ||| |||| || | ||| |
|
|
| T |
28384002 |
gacatcatcagaagtgggctgcaagtt-atacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcaga |
28383904 |
T |
|
| Q |
119 |
aagaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttc |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28383903 |
aagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttc |
28383804 |
T |
|
| Q |
219 |
tcccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
||||||| | || |||||||||||||||||||| |
|
|
| T |
28383803 |
tcccttggt-accaagacactcctcacctataa |
28383772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 122 - 251
Target Start/End: Original strand, 4951177 - 4951306
Alignment:
| Q |
122 |
aacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttctcc |
221 |
Q |
| |
|
|||||| ||||||| |||| ||||||| |||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||| ||||| ||||||| |
|
|
| T |
4951177 |
aacattatgagaacgttcttcctatttttaagaagaaaagagaaatcaattgagactttagacagttatcaaaaacgtgtccaacaactctagtttctcc |
4951276 |
T |
|
| Q |
222 |
cttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
||||||||| |||||||||||||||||||| |
|
|
| T |
4951277 |
cttgatcaccaagacactcctcacctataa |
4951306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 251
Target Start/End: Complemental strand, 7784764 - 7784634
Alignment:
| Q |
120 |
agaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
219 |
Q |
| |
|
|||||||||| ||||||||||| || ||| |||||||||||| |||||| ||||| ||||||| |||| ||||||| |||||||| | |||||||| |
|
|
| T |
7784764 |
agaacattctaagaacattctgtctgttt-aaagaagaaaagtgaaatcaattgaagctttggaaagctgccaaaaacatgtccaacaacactattttca |
7784666 |
T |
|
| Q |
220 |
cccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
| ||||||||| ||| |||| ||||||||||| |
|
|
| T |
7784665 |
ctcttgatcaccaaggcactgctcacctataa |
7784634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 251
Target Start/End: Original strand, 27168983 - 27169083
Alignment:
| Q |
151 |
aagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttctcccttgatcacaaagacactcctcacctata |
250 |
Q |
| |
|
||||||||||| |||||| ||||| | |||||||||| ||||| |||||||| |||||||||| | ||||||||| ||| ||||||||||||||| |
|
|
| T |
27168983 |
aagaagaaaagtgaaatcaattgaatcgttggacagctgcactaaacgtgtccaacacctctattttcactcttgatcaccaagtcactcctcacctata |
27169082 |
T |
|
| Q |
251 |
a |
251 |
Q |
| |
|
| |
|
|
| T |
27169083 |
a |
27169083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0233 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0233
Description:
Target: scaffold0233; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 26812 - 26582
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaagcaacaatgctttcaaagccaggaaatttagaa |
119 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| |||||||||||| || |||| ||||| ||||||||| ||||||||||||||| || | |||| |
|
|
| T |
26812 |
gacatcatcagcattgggcagcaagtt-atacagctcattacagctgattaactcatgcgcatacaagcaacagtgctttcaaagccagacaaatcagaa |
26714 |
T |
|
| Q |
120 |
agaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
219 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| | |||||||| ||||||||||| |
|
|
| T |
26713 |
agaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggatagctatcaaaaatgtgtccaacatctctattttct |
26614 |
T |
|
| Q |
220 |
cccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |
|
|
| T |
26613 |
cccttgatcaccaagacactcctcacctataa |
26582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 31711162 - 31710943
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaagcaacaatgctttcaaagccaggaaatttagaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||| | |||| |
|
|
| T |
31711162 |
gacatcatcagcattgggcaacaagtt-atacagctcattacaactggttctctcacgcgcaagcaagcaacagtgctttcaaagccaggaaaatcagaa |
31711064 |
T |
|
| Q |
120 |
agaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
219 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
31711063 |
agaacattctg-----------gctatttttaagaagaaaagagaaatcaattgagactttggacaactatcaaaaacgcgtccaacaactctattttct |
31710975 |
T |
|
| Q |
220 |
cccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
| ||||||||| |||||||||||||||||||| |
|
|
| T |
31710974 |
cacttgatcaccaagacactcctcacctataa |
31710943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 24 - 251
Target Start/End: Complemental strand, 24023445 - 24023219
Alignment:
| Q |
24 |
tcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaagcaacaatgctttcaaagccaggaaatttagaaagaa |
123 |
Q |
| |
|
||||||| |||| || ||||||| | ||| |||||||||| | ||||||||||||||||| |||||||| ||||||||||| ||| |||| ||| |||| |
|
|
| T |
24023445 |
tcatcagaattgagcgacaagttaa-acagctcattacagttggttctctcacgcgcaagaaagcaacagtgctttcaaagtaaggcaattcagacagaa |
24023347 |
T |
|
| Q |
124 |
cattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttctccct |
223 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
24023346 |
cattctaagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggatagctatcaaaaacgtgtccaacaactctattttctccct |
24023247 |
T |
|
| Q |
224 |
tgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
||||||| |||||||||||||||||||| |
|
|
| T |
24023246 |
tgatcactaagacactcctcacctataa |
24023219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 14272537 - 14272766
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaagcaacaatgctttcaaagccaggaaatttagaa |
119 |
Q |
| |
|
||||| |||| ||||||||||||||| | |||||||||||||| | |||||| | | ||||||||||||||||||||||||||| ||| |||| ||| |
|
|
| T |
14272537 |
gacataatcaacattgggcaacaagt--aaacaactcattacagttggttctccccctcgcaagcaagcaacaatgctttcaaagttaggcaattcagac |
14272634 |
T |
|
| Q |
120 |
agaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
219 |
Q |
| |
|
|||||||||||| ||| |||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
14272635 |
agaacattctgaaaacgttctggctatttataagtagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacaactctattttct |
14272734 |
T |
|
| Q |
220 |
cccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |
|
|
| T |
14272735 |
cccttgatcaccaagacactcctcacctataa |
14272766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 95140 - 94909
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaa-gcaacaatgctttcaaagccaggaaatttaga |
118 |
Q |
| |
|
||||||||||| | ||||| |||||| ||||| ||||| |||||| ||| ||||| |||||||||| |||||| ||||||| ||| |||| || | ||| |
|
|
| T |
95140 |
gacatcatcagaagtgggctgcaagtt-atacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcaga |
95042 |
T |
|
| Q |
119 |
aagaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttc |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
95041 |
aagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttc |
94942 |
T |
|
| Q |
219 |
tcccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| |
|
|
| T |
94941 |
tcccttggtcaccaagacactcctcacctataa |
94909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 104581 - 104350
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaa-gcaacaatgctttcaaagccaggaaatttaga |
118 |
Q |
| |
|
||||||||||| | ||||| |||||| ||||| ||||| |||||| ||| ||||| |||||||||| |||||| ||||||| ||| |||| || | ||| |
|
|
| T |
104581 |
gacatcatcagaagtgggctgcaagtt-atacagctcatcacagctggttatctcatgcgcaagcaaagcaacagtgctttctaagtcaggcaaatcaga |
104483 |
T |
|
| Q |
119 |
aagaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttc |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
104482 |
aagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaacgtgtccaacagctctattttc |
104383 |
T |
|
| Q |
219 |
tcccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| |
|
|
| T |
104382 |
tcccttggtcaccaagacactcctcacctataa |
104350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0482 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0482
Description:
Target: scaffold0482; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 3012 - 3243
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaa-gcaacaatgctttcaaagccaggaaatttaga |
118 |
Q |
| |
|
||||||||||| | ||||| |||||| ||||| |||||||||||| ||| ||||| |||||||||| |||||| ||||||||||| |||| || | ||| |
|
|
| T |
3012 |
gacatcatcagaagtgggctgcaagtt-atacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcaga |
3110 |
T |
|
| Q |
119 |
aagaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttc |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3111 |
aagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaaaagatactttggacagctatcaaaaacgtgtccaacagctctattttc |
3210 |
T |
|
| Q |
219 |
tcccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| |
|
|
| T |
3211 |
tcccttggtcaccaagacactcctcacctataa |
3243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 7789787 - 7789556
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaa-gcaacaatgctttcaaagccaggaaatttaga |
118 |
Q |
| |
|
||||||||||| | ||||| |||||| ||||| |||||||||||| ||| ||||| |||||||||| |||||| ||||||||||| |||| || | ||| |
|
|
| T |
7789787 |
gacatcatcagaagtgggctgcaagtt-atacagctcattacagctggttatctcatgcgcaagcaaagcaacagtgctttcaaagtcaggcaaatcaga |
7789689 |
T |
|
| Q |
119 |
aagaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttc |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7789688 |
aagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaaaagatactttggacagctatcaaaaacgtgtccaacagctctattttc |
7789589 |
T |
|
| Q |
219 |
tcccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| |
|
|
| T |
7789588 |
tcccttggtcaccaagacactcctcacctataa |
7789556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 412777 - 413008
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaa-gcaacaatgctttcaaagccaggaaatttaga |
118 |
Q |
| |
|
||||||||||| | |||||| |||||| ||||| |||||||||||| ||| ||||| | |||||||| |||| | ||||||||||| ||| || | ||| |
|
|
| T |
412777 |
gacatcatcagaagtgggcagcaagtt-atacagctcattacagctggttatctcatgtgcaagcaaagcaatagtgctttcaaagtcagacaaatcaga |
412875 |
T |
|
| Q |
119 |
aagaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttc |
218 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||| |||||||||| |
|
|
| T |
412876 |
aagaacattatgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaaagagtccaacaactctattttc |
412975 |
T |
|
| Q |
219 |
tcccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
412976 |
tcccttgatcaccaagacactcctcacctataa |
413008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 15810688 - 15810458
Alignment:
| Q |
20 |
gacatcatcagcattgggcaacaagtttatacaactcattacagctagttctctcacgcgcaagcaagcaacaatgctttcaaagccaggaaatttagaa |
119 |
Q |
| |
|
||||| ||||| |||| ||||||||| | ||| |||||||||||| |||||||||| ||||||||||||||| ||| ||||| | | || | ||| |
|
|
| T |
15810688 |
gacataatcagaattgagcaacaagtaaa-acagctcattacagctggttctctcactcgcaagcaagcaacagtgcaagcaaagttatgcaaatcagac |
15810590 |
T |
|
| Q |
120 |
agaacattctgagaacattctggctattttaaagaagaaaagagaaatctattgagactttggacagctatcaaaaacgcgtccaacagctctattttct |
219 |
Q |
| |
|
| |||||||||||| ||||||| ||||||| |||||||||| |||||| ||| |||||||||||||||||||||| | |||||||| |||||||| | |
|
|
| T |
15810589 |
ataacattctgagatcattctgtctatttttaagaagaaaaatgaaatcaattaggactttggacagctatcaaaaatgtgtccaacaactctatttgca |
15810490 |
T |
|
| Q |
220 |
cccttgatcacaaagacactcctcacctataa |
251 |
Q |
| |
|
|| |||||||| ||||||||| |||||||||| |
|
|
| T |
15810489 |
ccattgatcaccaagacactcatcacctataa |
15810458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 50 - 251
Target Start/End: Complemental strand, 41001056 - 41000855
Alignment:
| Q |
50 |
acaactcattacagctagttctctcacgcgcaagcaagcaacaatgctttcaaagccaggaaatttagaaagaacattctgagaacattctggctatttt |
149 |
Q |
| |
|
|||||||||||||| | |||||||||| || |||||| |||||||| ||| || ||| || | ||| | |||||||||||| | ||||| | | ||| |
|
|
| T |
41001056 |
acaactcattacagttggttctctcactcg--agcaagaaacaatgcaagcaaggc-aggcaaatcagacataacattctgagatctttctgcccaattt |
41000960 |
T |
|
| Q |
150 |
aaagaagaaaagagaaatctattgagactttggacagctatcaaaaa---cgcgtccaacagctctattttctcccttgatcacaaagacactcctcacc |
246 |
Q |
| |
|
||||||||||| |||||| | |||||||||||||| |||| ||||| || |||||||| |||||||||| | ||||||||| ||| ||||||||||| |
|
|
| T |
41000959 |
taagaagaaaagtgaaatcaaatgagactttggacatctataaaaaaaaacgtgtccaacatctctattttcactcttgatcaccaaggcactcctcacc |
41000860 |
T |
|
| Q |
247 |
tataa |
251 |
Q |
| |
|
||||| |
|
|
| T |
41000859 |
tataa |
41000855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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