View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0292_high_2 (Length: 426)
Name: NF0292_high_2
Description: NF0292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0292_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 293 - 423
Target Start/End: Complemental strand, 47698775 - 47698645
Alignment:
| Q |
293 |
tattaaaattaagtactcacacgactcaagaggtcatcggcgttatctgataaaagagaacgagcattttgggttgaactaattatctccaaaactatga |
392 |
Q |
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| T |
47698775 |
tattaaaaataagtactcacacgactcaagaagtcatcggagttatctgataaaagagaacgagaatttctttttgaactaattatctccaaaactatga |
47698676 |
T |
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| Q |
393 |
ctccaaaactgaaaacgtctgatttttctga |
423 |
Q |
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| T |
47698675 |
ctccaaaactgaaaacgtccgatttttctga |
47698645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 50644705 - 50644779
Alignment:
| Q |
82 |
caaagccattaaa-tgtgctaactgtctcgtgaactcattctctattcattccttcgctacacgtagtattattg |
155 |
Q |
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| T |
50644705 |
caaagccattaaaatttgccaactgtctcgtgaactcattcgctatgcattccttcgctacacatagcattattg |
50644779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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