View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0292_high_5 (Length: 346)
Name: NF0292_high_5
Description: NF0292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0292_high_5 |
 | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 52 - 336
Target Start/End: Complemental strand, 40352246 - 40351962
Alignment:
| Q |
52 |
agtttattatcctagagcaagtactcctgagttttgtattaagacttcagctgttaaagctgctatgagaattcaatggtgttctgggatgaggtttaag |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40352246 |
agtttattatcctagagcaagtactcctgagttttgtattaagacttcagctgttaaagctgctatgagaattcaatggtgttctgggatgaggtttaag |
40352147 |
T |
|
| Q |
152 |
atgccattcgaaaccgaagattcttctaggattagttggttcatgggaactatttcttctgttcaggttgttgatcctattcgttggcctaattcccctt |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40352146 |
atgccattcgaaaccgaagattcttctaggattagttggttcatgggaactatttcttctgttcaagttgttgatcctattcgttggcctaattcccctt |
40352047 |
T |
|
| Q |
252 |
ggagacttcttcaggtactactactactctcttgtcctatgtttgggatttgttttttattttgtttaggaagaacttgtctgtg |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40352046 |
ggagacttcttcaggtactactactactctcttgtcctatgtttggaatttgttttttattttgtttaggaagaacttgtttgtg |
40351962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 53 - 268
Target Start/End: Original strand, 21716192 - 21716407
Alignment:
| Q |
53 |
gtttattatcctagagcaagtactcctgagttttgtattaagacttcagctgttaaagctgctatgagaattcaatggtgttctgggatgaggtttaaga |
152 |
Q |
| |
|
||||| ||||| ||||| || ||||||||||| ||| ||||| |||||||||| || ||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
21716192 |
gtttactatccaagagctagcactcctgagttctgtgttaaggcttcagctgtgaaggctgctatgaggattcaatggtgttctgggatgaggttcaaga |
21716291 |
T |
|
| Q |
153 |
tgccattcgaaaccgaagattcttctaggattagttggttcatgggaactatttcttctgttcaggttgttgatcctattcgttggcctaattccccttg |
252 |
Q |
| |
|
|||| || ||||| ||||| |||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
21716292 |
tgccctttgaaactgaagactcttctaggattagttggtttatgggaacaatcgcttctgttcaggttgttgatcctattcgttggcctaactctccttg |
21716391 |
T |
|
| Q |
253 |
gagacttcttcaggta |
268 |
Q |
| |
|
| | |||||||||||| |
|
|
| T |
21716392 |
gcgccttcttcaggta |
21716407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 200 - 307
Target Start/End: Original strand, 51743087 - 51743194
Alignment:
| Q |
200 |
actatttcttctgttcaggttgttgatcctattcgttggcctaattccccttggagacttcttcaggtactactactactctcttgtcctatgtttggga |
299 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||| ||||| | |
|
|
| T |
51743087 |
actatttcatctgttcaggttgttgatcctattcggtggcctaattcctcttggagacttcttcaggtactactactaatctcttgtcatatatttggaa |
51743186 |
T |
|
| Q |
300 |
tttgtttt |
307 |
Q |
| |
|
||| |||| |
|
|
| T |
51743187 |
tttatttt |
51743194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 195
Target Start/End: Original strand, 51742162 - 51742247
Alignment:
| Q |
107 |
aaagctgctatgagaattcaatggtgttctgggatgaggtttaagatgccattcgaaaccgaagattcttctaggattagttggttcat |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||| || ||||||||||| |||||||||||||| |
|
|
| T |
51742162 |
aaagctgctatgagaattcaatggtgttctggtgtga-gtttaagatgccatt--aaactgaggattcttctagtattagttggttcat |
51742247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 56 - 268
Target Start/End: Original strand, 42730665 - 42730877
Alignment:
| Q |
56 |
tattatcctagagcaagtactcctgagttttgtattaagacttcagctgttaaagctgctatgagaattcaatggtgttctgggatgaggtttaagatgc |
155 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||||| ||||| ||| | |||||| |||| ||| |||||||||||||||||| ||||| || || |||| |
|
|
| T |
42730665 |
tattatccaagagctagtactcctgaattttgtgttaaggtttcttcagttaaatctgcaatgcaaattcaatggtgttctggtatgagattcaaaatgc |
42730764 |
T |
|
| Q |
156 |
cattcgaaaccgaagattcttctaggattagttggttcatgggaactatttcttctgttcaggttgttgatcctattcgttggcctaattccccttggag |
255 |
Q |
| |
|
| || ||||| || ||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| |||||||||||| |||| |||||| | |
|
|
| T |
42730765 |
cttttgaaactgaggattcttctaggattagttggtttatgggaactatttcttctgttcatgttcaagatccaattcgttggcctgattctccttggcg |
42730864 |
T |
|
| Q |
256 |
acttcttcaggta |
268 |
Q |
| |
|
|||||||||||| |
|
|
| T |
42730865 |
ccttcttcaggta |
42730877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 268
Target Start/End: Original strand, 28347338 - 28347484
Alignment:
| Q |
122 |
attcaatggtgttctgggatgaggtttaagatgccattcgaaaccgaagattcttctaggattagttggttcatgggaactatttcttctgttcaggttg |
221 |
Q |
| |
|
|||| |||||||||||| || || || |||||| | || |||||||| ||||| ||| | || |||||||| ||||||| | | ||| |||||| ||| |
|
|
| T |
28347338 |
attcgatggtgttctggaataagattcaagatggcctttgaaaccgaggattcgtctcgaataagttggtttatgggaattgtatctggagttcagtttg |
28347437 |
T |
|
| Q |
222 |
ttgatcctattcgttggcctaattccccttggagacttcttcaggta |
268 |
Q |
| |
|
||||||| ||| ||||||||||| |||||||| |||||||||||| |
|
|
| T |
28347438 |
ttgatccccttctctggcctaattcaccttggaggcttcttcaggta |
28347484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 88348 - 88448
Alignment:
| Q |
128 |
tggtgttctgggatgaggtttaagatg-ccattcgaaaccgaagattcttctaggattagttggttcatgggaactatttcttctgttcaggttgttgat |
226 |
Q |
| |
|
|||||| |||| |||||||| |||||| ||||| |||||||| || || || ||||| |||||||| || |||||| || |||||||||||| || |||| |
|
|
| T |
88348 |
tggtgtcctggaatgaggttcaagatggccatt-gaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgttcaggctgctgat |
88446 |
T |
|
| Q |
227 |
cc |
228 |
Q |
| |
|
|| |
|
|
| T |
88447 |
cc |
88448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 228
Target Start/End: Complemental strand, 40877935 - 40877835
Alignment:
| Q |
128 |
tggtgttctgggatgaggtttaagatg-ccattcgaaaccgaagattcttctaggattagttggttcatgggaactatttcttctgttcaggttgttgat |
226 |
Q |
| |
|
|||||| |||| |||||||| |||||| ||||| |||||||| || || || ||||| |||||||| || |||||| || |||||||||||| || |||| |
|
|
| T |
40877935 |
tggtgtcctggaatgaggttcaagatggccatt-gaaaccgaggactcatcaaggataagttggtttatcggaactgttgcttctgttcaggctgctgat |
40877837 |
T |
|
| Q |
227 |
cc |
228 |
Q |
| |
|
|| |
|
|
| T |
40877836 |
cc |
40877835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 437 times since January 2019
Visitors: 2566