View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0292_low_1 (Length: 564)
Name: NF0292_low_1
Description: NF0292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0292_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 29 - 554
Target Start/End: Complemental strand, 3149375 - 3148850
Alignment:
| Q |
29 |
agaagacagacaaatcattagtaaatgtaagagtatggttctatgcacatctagtagaactgaaagctttaaatttcttggtcttgatttaaatccaagc |
128 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3149375 |
agaagacagacaaatcattagtacatgtaagagtatggttctatgcacatctagtagaactgaaagctttaaatttcttggtcttgatttaaatccaagc |
3149276 |
T |
|
| Q |
129 |
taagtcagaagccatgcactgatttaataagttaaaacgataatatacaaacggcagcagcatttaataaaatcttaagaaccctacccatttccagatc |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3149275 |
taagtcagaagccatgcactgatttaataagttaaaacgataatatacaaacggcagcagcatttaataaaatcttaagaaccctacccatttccagatc |
3149176 |
T |
|
| Q |
229 |
agtaagcatgaaagatcttaccctactagacagaaagaaacaagatacagaaaacacagcaaaaatgttatactccatgtcnnnnnnnnccaatgctact |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
3149175 |
agtaagcatgaaagatcttaccctactagacagaaagaaacaagatacagaaaacacagcaaaaatgttatactccatgtcttttttttccaatgctgct |
3149076 |
T |
|
| Q |
329 |
gagatcttaattcaaattacattacttgcatgcactgcagacacaagattagcaacctaccactttacacttcacatcaatttgaacattcttttcactt |
428 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3149075 |
gagatcttaattcaaattacattacttgcatgcactgcagacacaagattagcaacctaccactttacacttcacatcaatttgaacattcttttcactt |
3148976 |
T |
|
| Q |
429 |
gttccaattaattctatgtaattccctaagagatagaatgtcttttgtgtcttaaggatgaaccagaagattttgtatctccaaggactacagaagttgg |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3148975 |
gttccaattaattctatgtaattccctaagagatagaatgtcttttgtgtcttaaggatgaaccagaagattttgtatctccaaggactacagaagttgg |
3148876 |
T |
|
| Q |
529 |
actattagaactccctgaagtctctg |
554 |
Q |
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|||||||||||||||||||||||||| |
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| T |
3148875 |
actattagaactccctgaagtctctg |
3148850 |
T |
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