View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0292_low_11 (Length: 284)

Name: NF0292_low_11
Description: NF0292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0292_low_11
NF0292_low_11
[»] chr2 (8 HSPs)
chr2 (1-157)||(39215301-39215457)
chr2 (89-157)||(39414958-39415026)
chr2 (90-149)||(39137598-39137657)
chr2 (72-147)||(39422018-39422093)
chr2 (59-157)||(39473627-39473725)
chr2 (90-144)||(39487723-39487777)
chr2 (89-157)||(39415042-39415110)
chr2 (115-157)||(44614681-44614723)
[»] chr7 (1 HSPs)
chr7 (80-149)||(19807538-19807607)
[»] chr8 (1 HSPs)
chr8 (99-148)||(44951213-44951262)
[»] scaffold0250 (1 HSPs)
scaffold0250 (91-148)||(4265-4322)


Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 39215301 - 39215457
Alignment:
Q  1 ggaatttgaagaccaactgaagatgttgatgaatgaacttgtatctnnnnnnntgatgttcgagagacaattgaagaatctcgaaaccaaagaaaagcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       || ||||||||||||||||||||||||||||||||||||||||||||    
T  39215301 ggaatttgaagaccaactgaagatgttgatgaatgaacttgtatctaaaaaaatgctgttcgagagacaattgaagaatctcgaaaccaaagaaaagcaa 39215400  T
Q  101 ttcgaagaacaaaagaaggagttccagtcaaaacaggaggaatttaaaggtcaagtg 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215401 ttcgaagaacaaaagaaggagttccagtcaaaacaggaggaatttaaaggtcaagtg 39215457  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 39415026 - 39414958
Alignment:
Q  89 aaagaaaagcaattcgaagaacaaaagaaggagttccagtcaaaacaggaggaatttaaaggtcaagtg 157  Q
    ||||||||| |||||  |||||||| |||||||||||| |||||| ||| |||||| ||||||||||||    
T  39415026 aaagaaaagaaattcagagaacaaatgaaggagttccactcaaaagagggggaattcaaaggtcaagtg 39414958  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 149
Target Start/End: Original strand, 39137598 - 39137657
Alignment:
Q  90 aagaaaagcaattcgaagaacaaaagaaggagttccagtcaaaacaggaggaatttaaag 149  Q
    ||||||||||||  |||||||||| ||||||||||||||||||| | |||||||| ||||    
T  39137598 aagaaaagcaatatgaagaacaaatgaaggagttccagtcaaaagaagaggaattcaaag 39137657  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 39422093 - 39422018
Alignment:
Q  72 tgaagaatctcgaaaccaaagaaaagcaattcgaagaacaaaagaaggagttccagtcaaaacaggaggaatttaa 147  Q
    ||||| |||||||| | | ||||||| ||||||| | ||||| ||||||||||| ||||||| |||||||||||||    
T  39422093 tgaaggatctcgaatcaatagaaaagaaattcgatggacaaatgaaggagttcctgtcaaaagaggaggaatttaa 39422018  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 157
Target Start/End: Complemental strand, 39473725 - 39473627
Alignment:
Q  59 ttcgagagacaattgaagaatctcgaaaccaaagaaaagcaattcgaagaacaaaagaaggagttccagtcaaaacaggaggaatttaaaggtcaagtg 157  Q
    |||||||| ||| ||||| | |||||| | ||||||||| ||||  | | ||||  ||||||||||||||||||| |||||||||||||  ||||||||    
T  39473725 ttcgagagccaactgaaggagctcgaatcaaaagaaaagaaatttaatggacaagtgaaggagttccagtcaaaagaggaggaatttaacagtcaagtg 39473627  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 39487777 - 39487723
Alignment:
Q  90 aagaaaagcaattcgaagaacaaaagaaggagttccagtcaaaacaggaggaatt 144  Q
    |||||||||||   |||||||||| ||||||||||||||||||| ||||||||||    
T  39487777 aagaaaagcaacatgaagaacaaatgaaggagttccagtcaaaagaggaggaatt 39487723  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 39415110 - 39415042
Alignment:
Q  89 aaagaaaagcaattcgaagaacaaaagaaggagttccagtcaaaacaggaggaatttaaaggtcaagtg 157  Q
    |||||||| |||||| |||||| || ||| ||||||||||||||| |||||||| | ||||| ||||||    
T  39415110 aaagaaaatcaattcaaagaacgaatgaaagagttccagtcaaaagaggaggaactcaaaggacaagtg 39415042  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 157
Target Start/End: Original strand, 44614681 - 44614723
Alignment:
Q  115 gaaggagttccagtcaaaacaggaggaatttaaaggtcaagtg 157  Q
    |||||||||||||||| || |||||||||||||||||| ||||    
T  44614681 gaaggagttccagtcagaagaggaggaatttaaaggtcgagtg 44614723  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 19807538 - 19807607
Alignment:
Q  80 ctcgaaaccaaagaaaagcaattcgaagaacaaaagaaggagttccagtcaaaacaggaggaatttaaag 149  Q
    ||||||||  ||||||||||||  |||||||||| ||||||||||||||||||| | |||||||| ||||    
T  19807538 ctcgaaacacaagaaaagcaatatgaagaacaaatgaaggagttccagtcaaaagaagaggaattcaaag 19807607  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 44951262 - 44951213
Alignment:
Q  99 aattcgaagaacaaaagaaggagttccagtcaaaacaggaggaatttaaa 148  Q
    ||||| |||||||| |||||||||| ||||||||| ||||||||||||||    
T  44951262 aattcaaagaacaagagaaggagtttcagtcaaaagaggaggaatttaaa 44951213  T

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Target: scaffold0250 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 4265 - 4322
Alignment:
Q  91 agaaaagcaattcgaagaacaaaagaaggagttccagtcaaaacaggaggaatttaaa 148  Q
    |||||||  |||| ||| |||| |||||||||| ||||||||| ||||||||||||||    
T  4265 agaaaagatattcaaaggacaagagaaggagtttcagtcaaaagaggaggaatttaaa 4322  T

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