View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0292_low_12 (Length: 281)
Name: NF0292_low_12
Description: NF0292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0292_low_12 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 25 - 270
Target Start/End: Complemental strand, 1952998 - 1952753
Alignment:
| Q |
25 |
catcaccatccactctgactatcatatcatcatcttccgttgcaccatagtgctcactccctccatagaaagttggtctgtccccaggccacatgcaaga |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1952998 |
catcaccatccactctgactatcatatcatcatcttccgttgcaccatagtgctcactccctccatagaaagttggtctgtccccaggccacatgcaaga |
1952899 |
T |
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| Q |
125 |
cgccacgtatgactgaggtgtcaacatcttgtatgcggggtctatgcgagcatcataaagagactgatagccttgatgactcctgaaaagcgcagcgttc |
224 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1952898 |
cgccatgtatgactgaggtgtcaacatctggtatgcggggtctaggcgagcatcataaagagactgatagccttggtgactcctgaaaagcgcagcgttc |
1952799 |
T |
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| Q |
225 |
tggtccattatgaaatggtcccgttgctcatgtccctgatatctct |
270 |
Q |
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||||||||||||||||| ||| | ||||||||| ||||||||||| |
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| T |
1952798 |
tggtccattatgaaatgatcctgctgctcatgtttctgatatctct |
1952753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 25 - 276
Target Start/End: Original strand, 1949420 - 1949671
Alignment:
| Q |
25 |
catcaccatccactctgactatcatatcatcatcttccgttgcaccatagtgctcactccctccatagaaagttggtctgtccccaggccacatgcaaga |
124 |
Q |
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||||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
1949420 |
catcaccatccacattgactgtcctatcatcatcttccgttgcaccatagtgctcagtccctccatagaaagttggcctgtccccaagccacatgcaaga |
1949519 |
T |
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| Q |
125 |
cgccacgtatgactgaggtgtcaacatcttgtatgcggggtctatgcgagcatcataaagagactgatagccttgatgactcctgaaaagcgcagcgttc |
224 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1949520 |
cgccacatatgactgaggtgtcaacatctggtatgcggggtctaggcgagcattataaagagactgatagccttggtgactcctgaaaagcgcagcgttc |
1949619 |
T |
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| Q |
225 |
tggtccattatgaaatggtcccgttgctcatgtccctgatatctctgctcct |
276 |
Q |
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||||||||||||||||| ||| | ||||| |||| |||||||||||| |||| |
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| T |
1949620 |
tggtccattatgaaatgatcctgctgctcctgtctctgatatctctgttcct |
1949671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 49 - 274
Target Start/End: Original strand, 353212 - 353440
Alignment:
| Q |
49 |
tatcatcatcttccgttgcaccatagtgctcactccctccatagaaagttggtctgtccccaggccacatgcaagacgccacgtatgactgaggtgtcaa |
148 |
Q |
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||||||||||||||| |||||||||||| |||| ||||||||||||||| || |||||||||||||||||||||||| ||| |||||| |||||| || |
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| T |
353212 |
tatcatcatcttccgctgcaccatagtgttcaccccctccatagaaagtaggcctgtccccaggccacatgcaagactaaacgaatgactcaggtgtgaa |
353311 |
T |
|
| Q |
149 |
catcttgtatgcggggtctatgcgagcatcataaagagactgata---gccttgatgactcctgaaaagcgcagcgttctggtccattatgaaatggtcc |
245 |
Q |
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| T |
353312 |
catctggtatgcggggtataggcgagcataatagagagactgatagatgcctcggtggctcctgaaaagcgcagcattctggtccattaaaaaatgatct |
353411 |
T |
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| Q |
246 |
cgttgctcatgtccctgatatctctgctc |
274 |
Q |
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|| ||||| |||| ||||||||||||||| |
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| T |
353412 |
cgctgctcctgtctctgatatctctgctc |
353440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 51 - 274
Target Start/End: Complemental strand, 27351831 - 27351605
Alignment:
| Q |
51 |
tcatcatcttccgttgcaccatagtgctcactccctccatagaaagttggtctgtccccaggccacatgcaagacgccacgtatgactgaggtgtcaaca |
150 |
Q |
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||||||||||||| |||||||||||| |||| ||||||||||||||| || ||||||||||||||||||||||| ||||| |||||| |||| | | || |
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| T |
27351831 |
tcatcatcttccgctgcaccatagtgttcaccccctccatagaaagtaggcatgtccccaggccacatgcaagactccacgaatgactcaggtctgagca |
27351732 |
T |
|
| Q |
151 |
tcttgtatgcggggtctatgcgagcatcataaagagactgata---gccttgatgactcctgaaaagcgcagcgttctggtccattatgaaatggtcccg |
247 |
Q |
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||| ||||||||||| | |||||||||||| ||||||||||| |||| | || ||||||||||||||||| ||||||||||||| ||||| || | |
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| T |
27351731 |
tctggtatgcggggttttggcgagcatcatagagagactgatagatgcctcggtggctcctgaaaagcgcagcattctggtccattaaaaaatgatcttg |
27351632 |
T |
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| Q |
248 |
ttgctcatgtccctgatatctctgctc |
274 |
Q |
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||||| |||| ||||||||||||||| |
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| T |
27351631 |
ctgctcttgtctctgatatctctgctc |
27351605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 51 - 274
Target Start/End: Complemental strand, 29225074 - 29224847
Alignment:
| Q |
51 |
tcatcatcttccgttgcaccatagtgctcactccctccatagaaagttggtctgtccccaggccacatgcaagacgccacgtatgactgaggtgtcaaca |
150 |
Q |
| |
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|||||||||||||||||||||||||| |||| ||||||||||||||| || |||||||||||||||||||||||| |||| |||||| |||||| | || |
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| T |
29225074 |
tcatcatcttccgttgcaccatagtgttcaccccctccatagaaagtaggcctgtccccaggccacatgcaagactacacgaatgactcaggtgtgagca |
29224975 |
T |
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| Q |
151 |
tcttgtatgcggggtctatgcgagcatcataaagagactgata---gccttgatgactcctgaaaagcgcagcgttctggtccatt-atgaaatggtccc |
246 |
Q |
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||| ||||||||||| | |||||||| ||| ||||||||||| |||| | || ||||||||||| ||||| |||||||||||| | ||||| || | |
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| T |
29224974 |
tctggtatgcggggttttggcgagcattatagagagactgatagatgcctcggtggctcctgaaaagtgcagcattctggtccattaaaaaaatgatctc |
29224875 |
T |
|
| Q |
247 |
gttgctcatgtccctgatatctctgctc |
274 |
Q |
| |
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| ||||| |||| ||||||||||||||| |
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| T |
29224874 |
gctgctcctgtctctgatatctctgctc |
29224847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 51 - 274
Target Start/End: Complemental strand, 29338373 - 29338146
Alignment:
| Q |
51 |
tcatcatcttccgttgcaccatagtgctcactccctccatagaaagttggtctgtccccaggccacatgcaagacgccacgtatgactgaggtgtcaaca |
150 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||||||| || |||||||||||||||||||||||| |||| |||||| |||||| | || |
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| T |
29338373 |
tcatcatcttccgttgcaccatagtgttcaccccctccatagaaagtaggcctgtccccaggccacatgcaagactacacgaatgactcaggtgtgagca |
29338274 |
T |
|
| Q |
151 |
tcttgtatgcggggtctatgcgagcatcataaagagactgata---gccttgatgactcctgaaaagcgcagcgttctggtccatt-atgaaatggtccc |
246 |
Q |
| |
|
||| ||||||||||| | |||||||| ||| ||||||||||| |||| | || ||||||||||| ||||| |||||||||||| | ||||| || | |
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| T |
29338273 |
tctggtatgcggggttttggcgagcattatagagagactgatagatgcctcggtggctcctgaaaagtgcagcattctggtccattaaaaaaatgatctc |
29338174 |
T |
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| Q |
247 |
gttgctcatgtccctgatatctctgctc |
274 |
Q |
| |
|
| ||||| |||| ||||||||||||||| |
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| T |
29338173 |
gctgctcctgtctctgatatctctgctc |
29338146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 51 - 234
Target Start/End: Complemental strand, 183537 - 183351
Alignment:
| Q |
51 |
tcatcatcttccgttgcaccatagtgctcactccctccatagaaagttggtctgtccccaggccacatgcaagacgccacgtatgactgaggtgtcaaca |
150 |
Q |
| |
|
||||||||||||| ||| |||||||| |||| ||||||||||||||| || |||||||||||||||||| ||||| ||||| |||||| |||||| | || |
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| T |
183537 |
tcatcatcttccgctgcgccatagtgttcaccccctccatagaaagtaggcctgtccccaggccacatgtaagactccacgaatgactcaggtgtgagca |
183438 |
T |
|
| Q |
151 |
tcttgtatgcggggtctatgcgagcatcataaagagactgatag---ccttgatgactcctgaaaagcgcagcgttctggtccatta |
234 |
Q |
| |
|
||| ||||||||||| | |||||||||||| |||||||||||| ||| |||| || |||||||||||||| ||||||||||||| |
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| T |
183437 |
tctggtatgcggggttttggcgagcatcatagagagactgatagatacctcgatggcttctgaaaagcgcagcattctggtccatta |
183351 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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