View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0292_low_4 (Length: 363)
Name: NF0292_low_4
Description: NF0292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0292_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 102 - 288
Target Start/End: Complemental strand, 36014155 - 36013969
Alignment:
| Q |
102 |
cataaccaagcataagttggtttcctatttaccaaaaaacaactatacttgttgaagtattcaaacagaaatgcctagaatacgtttcaagttaagctta |
201 |
Q |
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| T |
36014155 |
cataaccaagcataagttggtttcctatttaccaaaaaacaactatacttgttgaagtattcaaacagaaatgccttgaatacgtttcaagttaagctta |
36014056 |
T |
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| Q |
202 |
aagttacaatggtagtactagtactgtttaagtattatcctaaaataaggtaatctaaccatgtgaacaatccaattgttctaatac |
288 |
Q |
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| T |
36014055 |
aagttacaatggtagtaccagtactgtttaagtattatcctaaaataaggtaatctaaccatgtgaacaatccaattgttctaatac |
36013969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 284 - 355
Target Start/End: Complemental strand, 36013916 - 36013845
Alignment:
| Q |
284 |
aatacagaatacagagatcctgaacagaacaaataaagaaaccgagagcatctgagaagaggaaaacattgc |
355 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36013916 |
aatacagaatacagagatcctgaacaggacaaataaagaaaccgagagcatctgagaagaggaaaacattgc |
36013845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 312 - 355
Target Start/End: Complemental strand, 14749898 - 14749855
Alignment:
| Q |
312 |
acaaataaagaaaccgagagcatctgagaagaggaaaacattgc |
355 |
Q |
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|||| |||||||||| |||||||| ||||||||||||||||||| |
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| T |
14749898 |
acaagtaaagaaaccaagagcatccgagaagaggaaaacattgc |
14749855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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