View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0292_low_8 (Length: 331)
Name: NF0292_low_8
Description: NF0292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0292_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 96 - 316
Target Start/End: Complemental strand, 41077571 - 41077351
Alignment:
| Q |
96 |
acctctacccccaatacaaagttacaaactatgatgtttggtttgctacaggtcaacttcttgttgcatttctcatcgcctatgtaaatgagcgcgagag |
195 |
Q |
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| T |
41077571 |
acctctacccccaatacaaagttacaaactatgatgtttggtttgctacaggtcaacttcttgttgcatttctcatcgcctatgtaaatgagcgcgagag |
41077472 |
T |
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| Q |
196 |
agttgggttctcctcctgcgacacagcctgccaaatatggaagcccattgaggtcaaatatgcaaatctatctcggactcatttgatgtccctaaagaac |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41077471 |
agttgggttctcctcctgcgacacagcctgccaaatatggaagcccattgaggtcaaatatgcaaatctatctcggactcatttgatgtccctaaagaac |
41077372 |
T |
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| Q |
296 |
tgtagggaagtcataagggct |
316 |
Q |
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||||||||||||||||||||| |
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| T |
41077371 |
tgtagggaagtcataagggct |
41077351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 295
Target Start/End: Original strand, 50191477 - 50191530
Alignment:
| Q |
242 |
attgaggtcaaatatgcaaatctatctcggactcatttgatgtccctaaagaac |
295 |
Q |
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||||||| |||||||||||||| || |||||||||| |||||||||| |||||| |
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| T |
50191477 |
attgaggccaaatatgcaaatccatatcggactcatgtgatgtccctgaagaac |
50191530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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