View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0293_low_2 (Length: 478)
Name: NF0293_low_2
Description: NF0293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0293_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 73 - 449
Target Start/End: Original strand, 26111804 - 26112185
Alignment:
| Q |
73 |
aaaaagaaaactatgatgcatccagcaagaactccaatgattacagtggtaatgatccttgatatgagtagagattgagggctgttcttcatcaaaggtc |
172 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26111804 |
aaaaagaaaactatgatgcatccaataagaactccaatgattacagtggtaatgatccttgatatgagtagagattgagggctgttcttcatcaaaggtc |
26111903 |
T |
|
| Q |
173 |
cttctctttctctgcgctcaatcattgtatccaccaccaactcaaagactgaggttgaaatggtagttttgtttagttctggttatatagggttgtgaag |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||| ||||| |
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| T |
26111904 |
cttctctttctctgcgctcaatcattgtatccaccaccaactcaaagactgagattgaaatggaagttttgttttgttctggttatatagggttctgaag |
26112003 |
T |
|
| Q |
273 |
--ttttggagggt---taattaagaaatgaagaattgggtggtgagtttgagcacagatattcactttgaaactgaatttgattgaactactagcctctc |
367 |
Q |
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| T |
26112004 |
cttataggagggttaataattaagaaatgaagaattgggtggtcagtttgagcacagatattcactttgaaactgaatttgattgaactactagcctctc |
26112103 |
T |
|
| Q |
368 |
aaatattcttgatgggaatatgagaatccatctataactatatatagataaaggaacatgtgattttggattgatattttca |
449 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26112104 |
aaatattcttgatgggaatatgagaatacatctatacctatatatagataaaggaatatgtgattttggattgatattttca |
26112185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 73 - 448
Target Start/End: Original strand, 26056230 - 26056616
Alignment:
| Q |
73 |
aaaaagaaaactatgatgcatccagcaagaactccaatgattacagtggtaatgatccttgatatgagtagagattgagggctgttcttcatcaaaggtc |
172 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26056230 |
aaaaagaaaactatgatgcatccagtaagaactccaatgattacagtggtaatgatccttgatatgagtagagattgagggctgttcttcatcaagggtc |
26056329 |
T |
|
| Q |
173 |
cttctctttctctgcgctcaatcattgtatccaccaccaactcaaagactgaggttgaaatggtagttttgtttagttctggttatatagggttgtgaag |
272 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||| ||||| |
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| T |
26056330 |
cttctctttctctgcgctcaatcattgtatccaccaccaactcaaagactgagattgaaatggaagttttgttttgttctggttatatagggttttgaag |
26056429 |
T |
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| Q |
273 |
ttttggagggttaattaagaaatgaagaattgggtggtgagtttgagcacagatattc---------actttgaaactgaatttgattgaactactagcc |
363 |
Q |
| |
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||||||||||||||||||||||| |||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26056430 |
ctttggagggttaattaagaaatggagaattgggttgtcagtttgagcacagatattcagtacttcgactttgaaactgaatttgattgaactactagcc |
26056529 |
T |
|
| Q |
364 |
tctcaa--atattcttgatgggaatatgagaatccatctataactatatatagataaaggaacatgtgattttggattgatattttc |
448 |
Q |
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|||||| ||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| |||||||||||| |||| ||||| |
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| T |
26056530 |
tctcaaacatattcttgatgggaatatgagaattcatctatacctatatatagaaaaaggaatgtgtgattttggagtgattttttc |
26056616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 77 - 414
Target Start/End: Original strand, 26085471 - 26085817
Alignment:
| Q |
77 |
agaaaactatgatgcatccagcaagaactccaatgattacagtggtaatgatccttgatatgagtagagattgagggctgttcttcatcaaaggtccttc |
176 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26085471 |
agaaaactatgatgcatccagcaagaactccaatgattacagtggtaatgatccttgatatgagtagagattgagggctgttcttcatcaaaggtccttc |
26085570 |
T |
|
| Q |
177 |
tctttctctgcgctcaatcattgtatccaccaccaactcaaagactgaggttgaaatggtagttttgtttagttctggttatatagggttgtgaagtttt |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||| ||| |
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| T |
26085571 |
tctttctctgcgctcaatcattgtatccaccaccaactcaaagactgagattgaaatggtagttttgttttgttctggttatatagggttttgaagcttt |
26085670 |
T |
|
| Q |
277 |
ggagggttaattaagaaatgaagaattgggtggtgagtttgagcacagatattc---------actttgaaactgaatttgattgaactactagcctctc |
367 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
26085671 |
ggagggttaattaagaaatggagaattgggtggtcagtttgagcgcagatattcagtacttcgactttgatactgaatttgattgaactactagcctctc |
26085770 |
T |
|
| Q |
368 |
aaatattcttgatgggaatatgagaatccatctataactatatatag |
414 |
Q |
| |
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||| ||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
26085771 |
aaacattcttgatgggaatatgagaattcatctatacctatatatag |
26085817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 73 - 366
Target Start/End: Original strand, 26067892 - 26068185
Alignment:
| Q |
73 |
aaaaagaaaactatgatgcatccagcaagaactccaatgattacagtggtaatgatccttgatatgagtagagattgagggctgttcttcatcaaaggtc |
172 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26067892 |
aaaaagaaaactatgatgcatccagtaagaactccaatgattacagtggtaatgatccttgatatgagtagagattgagggctgttcttcatcaaaggtc |
26067991 |
T |
|
| Q |
173 |
cttctctttctctgcgctcaatcattgtatccaccaccaactcaaagactgaggttgaaatggtagttttgtttagttctggttatatagggttgtgaag |
272 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||| ||||| |
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| T |
26067992 |
cttctctttctctgcgctcaatcattgtatccaccaccaactcaaagactgagattgaaatggaagttttgttttgttctggttatatagggttttgaag |
26068091 |
T |
|
| Q |
273 |
ttttggagggttaattaagaaatgaagaattgggtggtgagtttgagcacagatattcactttgaaactgaatttgattgaactactagcctct |
366 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||| |||||| |||| |
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| T |
26068092 |
ctttggagggttaattaagaaatggagaattgggtggtcagtttgagcacatatattcacttcgaaactgaatttgattgaattactagtctct |
26068185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 73 - 323
Target Start/End: Original strand, 26128758 - 26129010
Alignment:
| Q |
73 |
aaaaagaaaactatgatgcatccagcaagaactccaatgattacagtggtaatgatccttgatatgagtagagattgagggctgttcttcatcaaaggtc |
172 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| | |||||||||| ||||| ||| |||||||| |||||| | |||| ||||||||||||| |||| |
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|
| T |
26128758 |
aaaaagaaaactatgatgcatccagtaagaactactatgattacagcggtaacaatctttgatatgcttagagaataagggttgttcttcatcaagggtc |
26128857 |
T |
|
| Q |
173 |
cttctctttctctgcgctcaatcattgtatccaccaccaactcaaagactgaggttgaaatggtagttttgtttagttctggttatatagggttgtgaag |
272 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||| |||||||| |||| ||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
26128858 |
cttctctttctctgtgctcaatcattgtatccaccaccacctcaaagattgagattgaaatggtagtattgtttagttctggttatatagggttctgaag |
26128957 |
T |
|
| Q |
273 |
--ttttggagggttaattaagaaatgaagaattgggtggtgagtttgagcaca |
323 |
Q |
| |
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| | |||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
26128958 |
cttataggagggttaattaagaaatgaagaattgggtggtcagtttgagcaca |
26129010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 237 - 366
Target Start/End: Original strand, 26048989 - 26049118
Alignment:
| Q |
237 |
agttttgtttagttctggttatatagggttgtgaagttttggagggttaattaagaaatgaagaattgggtggtgagtttgagcacagatattcactttg |
336 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||| | |
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| T |
26048989 |
agttttgttttgttctggttatatagggttttgaagctttggagggttaattaagaaatggagaattgggtggtcagtttgagcacatatattcacttcg |
26049088 |
T |
|
| Q |
337 |
aaactgaatttgattgaactactagcctct |
366 |
Q |
| |
|
|||||||||||||||||| |||||| |||| |
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| T |
26049089 |
aaactgaatttgattgaattactagtctct |
26049118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 77 - 224
Target Start/End: Original strand, 26121335 - 26121482
Alignment:
| Q |
77 |
agaaaactatgatgcatccagcaagaactccaatgattacagtggtaatgatccttgatatgagtagagattgagggctgttcttcatcaaaggtccttc |
176 |
Q |
| |
|
|||||| || |||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||| |||| | ||||||||||||| ||||||| |
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| T |
26121335 |
agaaaagtaagatgcatccaataagaactccaatgattacagtggtaacgattattgatatgagtagagaatgagagttgttcttcatcaagcgtccttc |
26121434 |
T |
|
| Q |
177 |
tctttctctgcgctcaatcattgtatccaccaccaactcaaagactga |
224 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| | |||||||||||| |
|
|
| T |
26121435 |
tctttctctgagcccaatcattgtatccaccactacctcaaagactga |
26121482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 73 - 245
Target Start/End: Original strand, 26038325 - 26038497
Alignment:
| Q |
73 |
aaaaagaaaactatgatgcatccagcaagaactccaatgattacagtggtaatgatccttgatatgagtagagattgagggctgttcttcatcaaaggtc |
172 |
Q |
| |
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||||||||| ||| |||||||||| |||||| ||||| | ||||| |||| |||||||||| || ||||||| |||||| |||| ||| || |||| |
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| T |
26038325 |
aaaaagaaagctaagatgcatccaataagaacaccaattactacagcagtaacgatccttgatttgcgtagagaatgagggttgtttcgcattaagggtc |
26038424 |
T |
|
| Q |
173 |
cttctctttctctgcgctcaatcattgtatccaccaccaactcaaagactgaggttgaaatggtagttttgtt |
245 |
Q |
| |
|
||||||||||||||||| ||||||||||| | ||||||| ||||||||||||| |||| |||||||||||||| |
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|
| T |
26038425 |
cttctctttctctgcgcccaatcattgtagctaccaccacctcaaagactgagattgagatggtagttttgtt |
26038497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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