View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0293_low_4 (Length: 358)
Name: NF0293_low_4
Description: NF0293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0293_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 7 - 344
Target Start/End: Complemental strand, 51741715 - 51741378
Alignment:
| Q |
7 |
tacaccctatatgttgataaatctatatcaacatataagaagtataatactattgtacttggaatactaattaatcatgaattatgcccttcttaacatc |
106 |
Q |
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| T |
51741715 |
tacaccctatatgttgataaagctatatcaacatataagaagtataatactattgtacttggaatactaattaatcatgaattatgcccttcttaacatc |
51741616 |
T |
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| Q |
107 |
tctatgttgttgaatgaccaaaacagaaccatgaatatcaaagtctgaagaagccaagacatcaccaaccgttccaagttctggacattcttcccaatca |
206 |
Q |
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| T |
51741615 |
tctatgttgttgaatgaccaaaacagaaccatgaatatcaaagtctgaagaagccaagacatcaccaaccgttccaagttctggacattcttcccaatca |
51741516 |
T |
|
| Q |
207 |
ctcatacctattgttaatgaactatttcctctaccacctcttcctactataaacaaagagtacaagtccccaatctctttcaaagattccactgtttgtg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51741515 |
ctcatacctattgttaatgaactatttcctctaccacctcttcctactataaacaaagagtacaagtccccaatctctttcaaagattccactgtttgtg |
51741416 |
T |
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| Q |
307 |
ttccatctttcacaaacttttccacatatccaatctgt |
344 |
Q |
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| T |
51741415 |
ttccatctttcacaaacttttccacatatccaatctgt |
51741378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 77 - 340
Target Start/End: Complemental strand, 10202446 - 10202183
Alignment:
| Q |
77 |
ttaatcatgaattatgcccttcttaacatctctatgttgttgaatgaccaaaacagaaccatgaatatcaaagtctgaagaagccaagacatcaccaacc |
176 |
Q |
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||||||||| |||| || ||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| || | ||||||||| |
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| T |
10202446 |
ttaatcatgtattagacctttcttgacatctctatgttgttgaatgaccaacacagaaccatgaatatcaaaatctgaagaagctaaaatatcaccaact |
10202347 |
T |
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| Q |
177 |
gttccaagttctggacattcttcccaatcactcatacctattgttaatgaactatttcctctaccacctcttcctactataaacaaagagtacaagtccc |
276 |
Q |
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| |||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||| |||| ||||||||||||||||| | ||| | |
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| T |
10202346 |
gatccaagttctggacattcctcccaatcactcatatctattgttagtgaactatttcctctaccaccctttccaactataaacaaagagtatatgtcac |
10202247 |
T |
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| Q |
277 |
caatctctttcaaagattccactgtttgtgttccatctttcacaaacttttccacatatccaat |
340 |
Q |
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|||||||||||||| |||| ||||||||| |||||| |||||||| ||||| ||||||||||| |
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| T |
10202246 |
caatctctttcaaacattcaactgtttgtcttccattcttcacaaaattttctacatatccaat |
10202183 |
T |
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