View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0293_low_5 (Length: 345)

Name: NF0293_low_5
Description: NF0293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0293_low_5
NF0293_low_5
[»] chr3 (3 HSPs)
chr3 (167-326)||(52093269-52093428)
chr3 (167-258)||(52090199-52090290)
chr3 (167-248)||(42391153-42391234)
[»] chr1 (2 HSPs)
chr1 (29-125)||(1747360-1747456)
chr1 (171-248)||(26124497-26124574)
[»] chr8 (1 HSPs)
chr8 (167-248)||(30566767-30566848)
[»] chr4 (3 HSPs)
chr4 (167-248)||(11983317-11983398)
chr4 (167-248)||(43382386-43382467)
chr4 (121-149)||(48341538-48341566)
[»] scaffold0050 (1 HSPs)
scaffold0050 (167-259)||(44316-44408)
[»] chr6 (1 HSPs)
chr6 (167-248)||(9764953-9765034)


Alignment Details
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 167 - 326
Target Start/End: Complemental strand, 52093428 - 52093269
Alignment:
Q  167 gcaggctgtggggtttgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgcatgagttgtttagagttt 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  52093428 gcaggctgtggggtttgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgcttgagttgtttagagttt 52093329  T
Q  267 tcaaaacttggatattatctaatactaaattagtaaaggttaaagaatacccatggtctt 326  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  52093328 tcaaaacttggatattatctaatactaaaatagtaaaggttaaagaatacccatggtctt 52093269  T

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Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 167 - 258
Target Start/End: Complemental strand, 52090290 - 52090199
Alignment:
Q  167 gcaggctgtggggtttgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgcatgagttgtt 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  52090290 gcaggctgtggggtttgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgcttaagttgtt 52090199  T

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Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 167 - 248
Target Start/End: Complemental strand, 42391234 - 42391153
Alignment:
Q  167 gcaggctgtggggtttgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgc 248  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42391234 gcaggctgtggggttcgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgc 42391153  T

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Target: chr1 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 29 - 125
Target Start/End: Original strand, 1747360 - 1747456
Alignment:
Q  29 ataagcaacgttgaaacaatgaaattcacaataataactagttacgtacttgaaatgtgtagacttaaagcgagaggaggggaagatgatatggttg 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1747360 ataagcaacgttgaaacaatgaaattcacaataataactagttacatacttgaaatttgtagacttaaagcgagaggaggggaagatgatatggttg 1747456  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 26124497 - 26124574
Alignment:
Q  171 gctgtggggtttgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgc 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26124497 gctgtggggtttgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgc 26124574  T

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Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 167 - 248
Target Start/End: Original strand, 30566767 - 30566848
Alignment:
Q  167 gcaggctgtggggtttgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgc 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30566767 gcaggctgtggggtttgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgc 30566848  T

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Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 167 - 248
Target Start/End: Complemental strand, 11983398 - 11983317
Alignment:
Q  167 gcaggctgtggggtttgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgc 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11983398 gcaggctgtggggtttgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgc 11983317  T

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Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 167 - 248
Target Start/End: Complemental strand, 43382467 - 43382386
Alignment:
Q  167 gcaggctgtggggtttgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgc 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43382467 gcaggctgtggggtttgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgc 43382386  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 149
Target Start/End: Original strand, 48341538 - 48341566
Alignment:
Q  121 ggttgatatggacaatacataatatatgc 149  Q
    |||||||||||||||||||||||||||||    
T  48341538 ggttgatatggacaatacataatatatgc 48341566  T

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Target: scaffold0050 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 167 - 259
Target Start/End: Complemental strand, 44408 - 44316
Alignment:
Q  167 gcaggctgtggggtttgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgcatgagttgttt 259  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  44408 gcaggctgtggggttcgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgcttgagatgttt 44316  T

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Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 167 - 248
Target Start/End: Complemental strand, 9765034 - 9764953
Alignment:
Q  167 gcaggctgtggggtttgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgc 248  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9765034 gcaggctgtggggttcgaacccacgcgcactcagtgcagtaggtcttaagtctacccccttagaccactcgggcaagcctgc 9764953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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