View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0293_low_6 (Length: 318)
Name: NF0293_low_6
Description: NF0293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0293_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 98 - 223
Target Start/End: Original strand, 5573652 - 5573777
Alignment:
| Q |
98 |
caccaaccatgttttgattatagattccatctcttagaagaaagtctaatgaagctacataatccagatgataattaaggaacaaacgaagaacaaacaa |
197 |
Q |
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| T |
5573652 |
caccaaccatgttttgattatagattccatctctaagaagaaagtctaatgaagctacagaatccagatgataattaaggaaccaaccaagaacaaacaa |
5573751 |
T |
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| Q |
198 |
gttgaagacataaatattaatgatgg |
223 |
Q |
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| T |
5573752 |
gttgaagacataaatattaatgatgg |
5573777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 83 - 193
Target Start/End: Original strand, 5582912 - 5583022
Alignment:
| Q |
83 |
gagaagaataggtaacaccaaccatgttttgattatagattccatctcttagaagaaagtctaatgaagctacataatccagatgataattaaggaacaa |
182 |
Q |
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| T |
5582912 |
gagaagaataggaaacaccaaccatgtctttattatagaatccatctctaagaagaaaatctaatgaagctaataaatccagataataattaaggaacca |
5583011 |
T |
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| Q |
183 |
acgaagaacaa |
193 |
Q |
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|| |||||||| |
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| T |
5583012 |
accaagaacaa |
5583022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 153
Target Start/End: Complemental strand, 12051707 - 12051652
Alignment:
| Q |
98 |
caccaaccatgttttgattatagattccatctcttagaagaaagtctaatgaagct |
153 |
Q |
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| T |
12051707 |
caccaaccatgtcttgatcatagattccgtctctaagaagaaaatctaatgaagct |
12051652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 5593404 - 5593461
Alignment:
| Q |
83 |
gagaagaataggtaacaccaaccatgttttgattatagattccatctcttagaagaaa |
140 |
Q |
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| T |
5593404 |
gagaagaataggaaacaccaaccatggctttatcatagattccatctctaagaagaaa |
5593461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 12064591 - 12064535
Alignment:
| Q |
98 |
caccaaccatgttttgattatagattccatctcttagaagaaagtctaatgaagcta |
154 |
Q |
| |
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|||||||||||| ||||| ||||||||| ||||| |||||||| | ||||||||||| |
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| T |
12064591 |
caccaaccatgtcttgatcatagattccgtctctaagaagaaaatataatgaagcta |
12064535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 12059139 - 12059087
Alignment:
| Q |
98 |
caccaaccatgttttgattatagattccatctcttagaagaaagtctaatgaa |
150 |
Q |
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|||||||||||| ||||| ||||||||| ||||| |||||||| | ||||||| |
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| T |
12059139 |
caccaaccatgtcttgatcatagattccgtctctaagaagaaaatataatgaa |
12059087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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