View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0293_low_7 (Length: 253)

Name: NF0293_low_7
Description: NF0293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0293_low_7
NF0293_low_7
[»] chr1 (12 HSPs)
chr1 (27-229)||(19757636-19757838)
chr1 (106-212)||(26762223-26762326)
chr1 (116-199)||(8326996-8327079)
chr1 (84-187)||(16256408-16256513)
chr1 (84-213)||(27901204-27901335)
chr1 (81-212)||(33323828-33323960)
chr1 (141-208)||(50959512-50959579)
chr1 (126-212)||(18628953-18629038)
chr1 (111-212)||(18650429-18650529)
chr1 (141-197)||(48563248-48563304)
chr1 (156-187)||(2688455-2688486)
chr1 (161-212)||(26925103-26925154)
[»] chr8 (6 HSPs)
chr8 (79-212)||(10659180-10659312)
chr8 (109-197)||(1029736-1029823)
chr8 (126-212)||(41940082-41940167)
chr8 (109-197)||(41566143-41566231)
chr8 (134-197)||(11954596-11954659)
chr8 (146-213)||(14575355-14575421)
[»] chr4 (10 HSPs)
chr4 (28-213)||(44206983-44207170)
chr4 (28-213)||(5383612-5383799)
chr4 (125-197)||(1745413-1745485)
chr4 (126-212)||(41839725-41839811)
chr4 (134-212)||(25100367-25100444)
chr4 (111-212)||(21121609-21121709)
chr4 (143-185)||(38011672-38011714)
chr4 (139-197)||(44136802-44136860)
chr4 (139-187)||(18402893-18402941)
chr4 (99-155)||(25100308-25100364)
[»] chr7 (4 HSPs)
chr7 (87-212)||(20118245-20118367)
chr7 (116-212)||(46611502-46611594)
chr7 (139-187)||(27900347-27900395)
chr7 (100-187)||(10623303-10623390)
[»] chr2 (8 HSPs)
chr2 (128-212)||(8216759-8216842)
chr2 (146-213)||(9848108-9848174)
chr2 (156-213)||(38002029-38002086)
chr2 (137-197)||(12419537-12419597)
chr2 (137-197)||(12431597-12431657)
chr2 (156-187)||(4730708-4730739)
chr2 (157-197)||(5136197-5136237)
chr2 (139-187)||(36254575-36254623)
[»] chr6 (3 HSPs)
chr6 (124-187)||(31304006-31304069)
chr6 (110-187)||(29032661-29032738)
chr6 (134-187)||(3008851-3008904)
[»] chr3 (4 HSPs)
chr3 (79-213)||(23085152-23085284)
chr3 (142-212)||(47005825-47005894)
chr3 (126-212)||(51663940-51664025)
chr3 (139-187)||(35740193-35740241)
[»] chr5 (2 HSPs)
chr5 (141-212)||(12566904-12566974)
chr5 (136-197)||(18274015-18274076)
[»] scaffold0003 (1 HSPs)
scaffold0003 (140-197)||(353236-353293)


Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 27 - 229
Target Start/End: Original strand, 19757636 - 19757838
Alignment:
Q  27 gtgttgttcctagattgggagggttcggcttgacctttttgcagcggatggctcgtaaacccgaaagggtttgttgtgattcataaactcgaaaggattt 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||    
T  19757636 gtgttgttcctagattgggagggttcggcttgacctttttgcagcggatggctcgtaaacccgaaagggtctgttgtgattcataaactcgaaagggttt 19757735  T
Q  127 ggttcgtttaatccgaaagggtctagttcctaacgtattggactcatcccacgatctgagtctttacgcgttgctttgctcgaaaggcacttaatgtttg 226  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  19757736 ggtttgtttaacccgaaagggtctagttcctaacgtattggactcatcccacgatctgagtctttacacgttgctttgctcgaaaggcactttatgtttg 19757835  T
Q  227 atg 229  Q
    |||    
T  19757836 atg 19757838  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 212
Target Start/End: Original strand, 26762223 - 26762326
Alignment:
Q  106 ttcataaactcgaaaggatttggttcgtttaatccgaaagggtctagttcctaacgtattggactcatcccacgatctgagtctttacgcgttgctttgc 205  Q
    ||||||||| || |||| | |||||||||||| |||||||||||| ||| ||||||||||| ||||  ||| |||||||| | ||||||||||| |||||    
T  26762223 ttcataaacccgtaagggtctggttcgtttaacccgaaagggtctggttactaacgtattgaactc--ccctcgatctgactttttacgcgttg-tttgc 26762319  T
Q  206 tcgaaag 212  Q
    |||||||    
T  26762320 tcgaaag 26762326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 8327079 - 8326996
Alignment:
Q  116 cgaaaggatttggttcgtttaatccgaaagggtctagttcctaacgtattggactcatcccacgatctgagtctttacgcgttg 199  Q
    ||||||||| ||| | | |||| |||||||||||| ||| || |||||||| ||||||||| |||||||||| |||||||||||    
T  8327079 cgaaaggatctgggttgattaacccgaaagggtctggtttctgacgtattgaactcatccctcgatctgagtttttacgcgttg 8326996  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 187
Target Start/End: Original strand, 16256408 - 16256513
Alignment:
Q  84 aacccgaaagggtttgttgtg--attcataaactcgaaaggatttggttcgtttaatccgaaagggtctagttcctaacgtattggactcatcccacgat 181  Q
    ||||||||||||| |||||||  ||| | |||| || |||| | |||||| ||||| ||||||||||||  || || |||||||||||||||||| ||||    
T  16256408 aacccgaaagggtctgttgtgtgattaaaaaacccgtaagggtctggttcttttaacccgaaagggtctgtttgctgacgtattggactcatccctcgat 16256507  T
Q  182 ctgagt 187  Q
    ||||||    
T  16256508 ctgagt 16256513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 213
Target Start/End: Complemental strand, 27901335 - 27901204
Alignment:
Q  84 aacccgaaagggtttgttgt--gattcataaactcgaaaggatttggttcgtttaatccgaaagggtctagttcctaacgtattggactcatcccacgat 181  Q
    ||||||||||||| |||| |  |||||| ||| ||| |||| | |||||| ||||| ||||||||||||  || ||||  ||||||||||||||| ||||    
T  27901335 aacccgaaagggtctgttatatgattcaaaaattcgtaagggtctggttcttttaacccgaaagggtctgtttgctaatatattggactcatccctcgat 27901236  T
Q  182 ctgagtctttacgcgttgctttgctcgaaagg 213  Q
    | ||||  ||||| |||| |||||||| ||||    
T  27901235 cagagttcttacgtgttgttttgctcggaagg 27901204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 212
Target Start/End: Original strand, 33323828 - 33323960
Alignment:
Q  81 gtaaacccgaaagggtttgttgtgattcataaactcgaaaggatttggtt-cgtttaatccgaaagggtctagttcctaacgtattggactcatcccacg 179  Q
    |||||||||||||||| || ||||  ||  |||| ||||| | | ||||| ||||| | |||||||||| | |||  | |||||||||||||||||| ||    
T  33323828 gtaaacccgaaagggtctgatgtgtctctaaaacccgaaatggtctggtttcgtttgacccgaaagggtatggttaatgacgtattggactcatccctcg 33323927  T
Q  180 atctgagtctttacgcgttgctttgctcgaaag 212  Q
    ||||||||  |||||||||| ||||||| ||||    
T  33323928 atctgagttcttacgcgttgttttgctcaaaag 33323960  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 50959579 - 50959512
Alignment:
Q  141 gaaagggtctagttcctaacgtattggactcatcccacgatctgagtctttacgcgttgctttgctcg 208  Q
    |||||||||| ||| || |||||||||||||||||| ||||||||||  ||||||||||  |||||||    
T  50959579 gaaagggtctggttactgacgtattggactcatccctcgatctgagttcttacgcgttgtattgctcg 50959512  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 18629038 - 18628953
Alignment:
Q  126 tggttcgtttaatccgaaagggtctagttcctaacgtattggactcatcccacgatctgagtctttacgcgttgctttgctcgaaag 212  Q
    ||||||||||||   |||||||||| ||| || |||||||||||||||||| | ||||||||  |||||||||| |||| |||||||    
T  18629038 tggttcgtttaacttgaaagggtctggttactgacgtattggactcatccctcaatctgagttcttacgcgttg-tttgatcgaaag 18628953  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 212
Target Start/End: Complemental strand, 18650529 - 18650429
Alignment:
Q  111 aaactcgaaaggatttggttcgtttaatccgaaagggtctagttcctaacgtattggactcatcccacgatctgagtctttacgcgttgctttgctcgaa 210  Q
    |||| ||||||| | |||||||||||| ||| |||||| | ||| || ||||||||||||||||||  ||||| |||  |||||| |||| |||||||||    
T  18650529 aaacccgaaagggtgtggttcgtttaacccggaagggtatggttactgacgtattggactcatcccttgatcttagttcttacgcattgc-ttgctcgaa 18650431  T
Q  211 ag 212  Q
    ||    
T  18650430 ag 18650429  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 48563248 - 48563304
Alignment:
Q  141 gaaagggtctagttcctaacgtattggactcatcccacgatctgagtctttacgcgt 197  Q
    |||||||||| ||| ||||| |||||||||||||||||||||| |||  ||||||||    
T  48563248 gaaagggtctggttactaacatattggactcatcccacgatctaagttcttacgcgt 48563304  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 187
Target Start/End: Complemental strand, 2688486 - 2688455
Alignment:
Q  156 ctaacgtattggactcatcccacgatctgagt 187  Q
    ||||||||||||||||||||||||||||||||    
T  2688486 ctaacgtattggactcatcccacgatctgagt 2688455  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 26925154 - 26925103
Alignment:
Q  161 gtattggactcatcccacgatctgagtctttacgcgttgctttgctcgaaag 212  Q
    |||||||||||||||| ||||||||||  |||||||||| || |||||||||    
T  26925154 gtattggactcatccctcgatctgagttcttacgcgttgtttggctcgaaag 26925103  T

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Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 79 - 212
Target Start/End: Complemental strand, 10659312 - 10659180
Alignment:
Q  79 tcgtaaacccgaaagggtttgttgtgattcataaactcgaaaggatttggttcgtttaatccgaaagggtctagttcctaacgtattggactcatcccac 178  Q
    ||||||||||||||||||||| |||| ||||  ||| ||||||||| |||||||||||| | ||||| |||| ||| || |||||||||||||||||| |    
T  10659312 tcgtaaacccgaaagggtttggtgtg-ttcaataacccgaaaggatctggttcgtttaacctgaaagagtctggttgctgacgtattggactcatccctc 10659214  T
Q  179 gatctgagtctttacgcgttgctttgctcgaaag 212  Q
    |||||||||  |||||||||| ||||||||||||    
T  10659213 gatctgagttcttacgcgttgttttgctcgaaag 10659180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 197
Target Start/End: Complemental strand, 1029823 - 1029736
Alignment:
Q  109 ataaactcgaaaggatttggttcgtttaatccgaaagggtctagttcctaacgtattggactcatcccacgatctgagtctttacgcgt 197  Q
    |||||| || |||| | ||||||  |||| |||||||||||| ||| ||||||||||||||||||||||||||||||||  ||||||||    
T  1029823 ataaacccggaagggtctggttctattaacccgaaagggtct-gttactaacgtattggactcatcccacgatctgagttcttacgcgt 1029736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 41940167 - 41940082
Alignment:
Q  126 tggttcgtttaatccgaaagggtctagttcctaacgtattggactcatcccacgatctgagtctttacgcgttgctttgctcgaaag 212  Q
    |||||||||||| |||| ||||| | |||  | |||||||| ||||||||| |||||||||| ||||||||||| ||||||||||||    
T  41940167 tggttcgtttaacccgatagggtatggtttttgacgtattgaactcatccctcgatctgagtttttacgcgttg-tttgctcgaaag 41940082  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 197
Target Start/End: Original strand, 41566143 - 41566231
Alignment:
Q  109 ataaactcgaaaggatttggttcgtttaatccgaaagggtctagttcctaacgtattggactcatcccacgatctgagtctttacgcgt 197  Q
    |||||| ||||||| | ||||||  |||| ||  |||||||| ||| |||||||||| |||||||||||||||||||||  ||||||||    
T  41566143 ataaacccgaaagggtatggttctgttaacccataagggtctggttactaacgtattagactcatcccacgatctgagttcttacgcgt 41566231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 197
Target Start/End: Complemental strand, 11954659 - 11954596
Alignment:
Q  134 ttaatccgaaagggtctagttcctaacgtattggactcatcccacgatctgagtctttacgcgt 197  Q
    |||| |||||||||||| |||  ||||||||||||||||||||  |||||||||  ||||||||    
T  11954659 ttaacccgaaagggtctggttattaacgtattggactcatccctggatctgagttcttacgcgt 11954596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 14575421 - 14575355
Alignment:
Q  146 ggtctagttcctaacgtattggactcatcccacgatctgagtctttacgcgttgctttgctcgaaagg 213  Q
    ||||| ||| || ||||||| |||||||||| |||||||| | |||||||||||| ||||||||||||    
T  14575421 ggtctggttactgacgtattagactcatccctcgatctgattttttacgcgttgc-ttgctcgaaagg 14575355  T

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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 28 - 213
Target Start/End: Complemental strand, 44207170 - 44206983
Alignment:
Q  28 tgttgttcctagattgggagggttcggct-tgacctttttgcagcggatggct-cgtaaacccgaaagggtttgttgtgattcataaactcgaaaggatt 125  Q
    ||||||| ||||||||||||||||||| | ||||||||||| || |||| | | ||||||| ||||||||| ||||||||| |  ||||||| |||| |     
T  44207170 tgttgttactagattgggagggttcggatatgacctttttgaagtggattgtttcgtaaactcgaaagggtctgttgtgatactaaaactcggaagggtc 44207071  T
Q  126 tggttcgtttaatccgaaagggtctagttcctaacgtattggactcatcccacgatctgagtctttacgcgttgctttgctcgaaagg 213  Q
    ||||| |||||| | |||||||||| |||  | |||||||||||||||||  ||||||||||  |||||||||| |||| ||||||||    
T  44207070 tggtttgtttaaacagaaagggtctggttgttgacgtattggactcatccatcgatctgagttcttacgcgttgttttgttcgaaagg 44206983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 213
Target Start/End: Original strand, 5383612 - 5383799
Alignment:
Q  28 tgttgttcctagattgggagggttcggct-tgacctttttgcagcggatggct-cgtaaacccgaaagggtttgttgtgattcataaactcgaaaggatt 125  Q
    ||||||| ||||||||||||||||| | | ||||||||||| || |||| | | ||||||||| || |||| |||||||||||  |||| || | || |     
T  5383612 tgttgttactagattgggagggttcagatatgacctttttgaagtggattgtttcgtaaaccctaacgggtctgttgtgattctaaaacccggaggggtc 5383711  T
Q  126 tggttcgtttaatccgaaagggtctagttcctaacgtattggactcatcccacgatctgagtctttacgcgttgctttgctcgaaagg 213  Q
    ||||||||||||||||||||||||| ||   | |||||||||||||||||| |||| | |||  || ||||||| |||||||||||||    
T  5383712 tggttcgtttaatccgaaagggtctggtagttgacgtattggactcatccctcgatttaagttcttgcgcgttgttttgctcgaaagg 5383799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 1745413 - 1745485
Alignment:
Q  125 ttggttcgtttaatccgaaagggtctagttcctaacgtattggactcatcccacgatctgagtctttacgcgt 197  Q
    ||||||||||||| |||||||||||| ||| ||||||||||||||||||||| | ||||||||  ||||||||    
T  1745413 ttggttcgtttaacccgaaagggtctggttactaacgtattggactcatccctcaatctgagttcttacgcgt 1745485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 41839811 - 41839725
Alignment:
Q  126 tggttcgtttaatccgaaagggtctagttcctaacgtattggactcatcccacgatctgagtctttacgcgttgctttgctcgaaag 212  Q
    |||||||||||| | |||||||||| ||| || |||||||||||||||||| ||||||||||  ||| |||||| || |||||||||    
T  41839811 tggttcgtttaacctgaaagggtcttgttactgacgtattggactcatccctcgatctgagttcttatgcgttgtttggctcgaaag 41839725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 212
Target Start/End: Original strand, 25100367 - 25100444
Alignment:
Q  134 ttaatccgaaagggtctagttcctaacgtattggactcatcccacgatctgagtctttacgcgttgctttgctcgaaag 212  Q
    |||| |||||||||||| ||| || |||||||| ||||||||| |||||||||| ||||||| ||| |||| |||||||    
T  25100367 ttaacccgaaagggtctggttgctgacgtattgaactcatccctcgatctgagtttttacgctttg-tttgttcgaaag 25100444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 212
Target Start/End: Original strand, 21121609 - 21121709
Alignment:
Q  111 aaactcgaaaggatttggttcgtttaatccgaaagggtctagttcctaacgtattggactcatcccacgatctgagtctttacgcgttgctttgctcgaa 210  Q
    |||| ||||||| | ||||||||||||  ||||||||||| ||| ||  ||||||| ||||||||| | || ||||| ||||| ||||| ||||||||||    
T  21121609 aaacccgaaagggtctggttcgtttaactcgaaagggtctggtttctggcgtattgaactcatccctcaatttgagtttttacacgttg-tttgctcgaa 21121707  T
Q  211 ag 212  Q
    ||    
T  21121708 ag 21121709  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 38011714 - 38011672
Alignment:
Q  143 aagggtctagttcctaacgtattggactcatcccacgatctga 185  Q
    |||||||| ||| ||||||||||||||||||||| ||||||||    
T  38011714 aagggtctggttactaacgtattggactcatccctcgatctga 38011672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 44136802 - 44136860
Alignment:
Q  139 ccgaaagggtctagttcctaacgtattggactcatcccacgatctgagtctttacgcgt 197  Q
    |||||||||||| ||| || |||||||||||||||||| ||||| ||||  ||||||||    
T  44136802 ccgaaagggtctggttactgacgtattggactcatccctcgatccgagttcttacgcgt 44136860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 18402941 - 18402893
Alignment:
Q  139 ccgaaagggtctagttcctaacgtattggactcatcccacgatctgagt 187  Q
    |||||||||||| ||| ||||||||||| ||||||||  ||||||||||    
T  18402941 ccgaaagggtctggttactaacgtattgaactcatccatcgatctgagt 18402893  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 25100308 - 25100364
Alignment:
Q  99 gttgtgattcataaactcgaaaggatttggttcgtttaatccgaaagggtctagttc 155  Q
    |||||| ||||||||| ||||||| | |||||||||||| || ||||||||| ||||    
T  25100308 gttgtgtttcataaacccgaaagggtctggttcgtttaacccaaaagggtctggttc 25100364  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 212
Target Start/End: Complemental strand, 20118367 - 20118245
Alignment:
Q  87 ccgaaagggtttgttgtgattcataaactcgaaaggatttggttcgtttaatccgaaagggtctagttcctaacgtattggactcatcccacgatctgag 186  Q
    ||||||||||||| |||| ||||  ||| ||||||| | |||||||||||| ||||||||||   ||| || |||||||||||||||||| |||| ||||    
T  20118367 ccgaaagggtttggtgtg-ttcaataacccgaaagggtctggttcgtttaacccgaaagggtg--gttgctgacgtattggactcatccctcgatatgag 20118271  T
Q  187 tctttacgcgttgctttgctcgaaag 212  Q
    |  ||||| || | ||||||||||||    
T  20118270 ttcttacgtgtaggtttgctcgaaag 20118245  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 212
Target Start/End: Complemental strand, 46611594 - 46611502
Alignment:
Q  116 cgaaaggatttggttcgtttaatccgaaagggtctagttcctaacgtattggactcatcccacgatctgagtctttacgcgttgctttgctcgaaag 212  Q
    ||||||| | ||||||||| || ||||||||||||  ||    |||||||||||||||||| ||||||||||  |||||||||| ||||||||||||    
T  46611594 cgaaagggtctggttcgttcaacccgaaagggtctgattg---acgtattggactcatccctcgatctgagttcttacgcgttg-tttgctcgaaag 46611502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 27900395 - 27900347
Alignment:
Q  139 ccgaaagggtctagttcctaacgtattggactcatcccacgatctgagt 187  Q
    |||||||||||| ||| ||||| ||||||||||||||| ||||||||||    
T  27900395 ccgaaagggtctggttactaacatattggactcatccctcgatctgagt 27900347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 10623303 - 10623390
Alignment:
Q  100 ttgtgattcataaactcgaaaggatttggttcgtttaatccgaaagggtctagttcctaacgtattggactcatcccacgatctgagt 187  Q
    |||||| ||| |||| ||||| | | ||||||  |||| |||| ||||| | ||| ||||||||||||||||||||| ||||||||||    
T  10623303 ttgtgactcaaaaacccgaaaaggtctggttctattaacccgatagggtttggttactaacgtattggactcatccctcgatctgagt 10623390  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 212
Target Start/End: Complemental strand, 8216842 - 8216759
Alignment:
Q  128 gttcgtttaatccgaaagggtctagttcctaacgtattggactcatcccacgatctgagtctttacgcgttgctttgctcgaaag 212  Q
    |||||||||| |||||||||||| |||| | | |||||| |||||||||  ||||||||| ||||||||||| |||| |||||||    
T  8216842 gttcgtttaacccgaaagggtctggttcttgatgtattgaactcatcccttgatctgagtttttacgcgttg-tttgttcgaaag 8216759  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 9848108 - 9848174
Alignment:
Q  146 ggtctagttcctaacgtattggactcatcccacgatctgagtctttacgcgttgctttgctcgaaagg 213  Q
    ||||| ||| || |||||||||||||||||| ||||||||||  ||||||||||| ||||||||||||    
T  9848108 ggtctggttactgacgtattggactcatccctcgatctgagttcttacgcgttgc-ttgctcgaaagg 9848174  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 38002029 - 38002086
Alignment:
Q  156 ctaacgtattggactcatcccacgatctgagtctttacgcgttgctttgctcgaaagg 213  Q
    ||||||||||||||||||||| ||||||||||  ||||| ||||  ||||||||||||    
T  38002029 ctaacgtattggactcatccctcgatctgagttcttacgtgttgtcttgctcgaaagg 38002086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 12419597 - 12419537
Alignment:
Q  137 atccgaaagggtctagttcctaacgtattggactcatcccacgatctgagtctttacgcgt 197  Q
    |||||||||||| | ||| |||||||||||||||||||||  |||||||||  ||||||||    
T  12419597 atccgaaagggtttggttactaacgtattggactcatccctagatctgagttcttacgcgt 12419537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 12431657 - 12431597
Alignment:
Q  137 atccgaaagggtctagttcctaacgtattggactcatcccacgatctgagtctttacgcgt 197  Q
    |||||||||||| | ||| |||||||||||||||||||||  |||||||||  ||||||||    
T  12431657 atccgaaagggtttggttactaacgtattggactcatccctagatctgagttcttacgcgt 12431597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 187
Target Start/End: Original strand, 4730708 - 4730739
Alignment:
Q  156 ctaacgtattggactcatcccacgatctgagt 187  Q
    ||||||||||||||||||||||||||||||||    
T  4730708 ctaacgtattggactcatcccacgatctgagt 4730739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 5136197 - 5136237
Alignment:
Q  157 taacgtattggactcatcccacgatctgagtctttacgcgt 197  Q
    |||||||||||||||||||| ||||||||||  ||||||||    
T  5136197 taacgtattggactcatccctcgatctgagttcttacgcgt 5136237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 36254575 - 36254623
Alignment:
Q  139 ccgaaagggtctagttcctaacgtattggactcatcccacgatctgagt 187  Q
    |||||||| ||| ||| ||| ||||||||||||||||| ||||||||||    
T  36254575 ccgaaaggttctggtttctatcgtattggactcatccctcgatctgagt 36254623  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 187
Target Start/End: Original strand, 31304006 - 31304069
Alignment:
Q  124 tttggttcgtttaatccgaaagggtctagttcctaacgtattggactcatcccacgatctgagt 187  Q
    ||||||||| |||| |||||||||||| ||| || |||||||| ||||||||| ||||||||||    
T  31304006 tttggttcgattaacccgaaagggtctggttactgacgtattgaactcatccctcgatctgagt 31304069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 187
Target Start/End: Original strand, 29032661 - 29032738
Alignment:
Q  110 taaactcgaaaggatttggttcgtttaatccgaaagggtctagttcctaacgtattggactcatcccacgatctgagt 187  Q
    |||||||||||||  |||| |  ||||| || ||| ||||| ||| ||||||||||||||||||||| ||||||||||    
T  29032661 taaactcgaaagggcttggatgttttaacccaaaatggtctggttactaacgtattggactcatccctcgatctgagt 29032738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 3008904 - 3008851
Alignment:
Q  134 ttaatccgaaagggtctagttcctaacgtattggactcatcccacgatctgagt 187  Q
    |||| |||||||||||| ||| |||||||||| |||||||||  ||||||||||    
T  3008904 ttaacccgaaagggtctggttactaacgtattagactcatccttcgatctgagt 3008851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 213
Target Start/End: Complemental strand, 23085284 - 23085152
Alignment:
Q  79 tcgtaaacccgaaagggtttgttgtgattcataaactcgaaaggatttggttcgtttaatccgaaagggtctagttcctaacgtattggactcatcccac 178  Q
    ||||||||||||||||||| |||| |||||| || | ||||||| | || |||||||||| ||||||| ||| ||| || |||||||| ||| || || |    
T  23085284 tcgtaaacccgaaagggttcgttg-gattcaaaatc-cgaaagggtctgattcgtttaatacgaaaggatctggttactgacgtattgaacttattcctc 23085187  T
Q  179 gatctgagtctttacgcgttgctttgctcgaaagg 213  Q
    ||| |||||  |||||  ||| |||||||||||||    
T  23085186 gatttgagttcttacgaattgttttgctcgaaagg 23085152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 47005894 - 47005825
Alignment:
Q  142 aaagggtctagttcctaacgtattggactcatcccacgatctgagtctttacgcgttgctttgctcgaaag 212  Q
    ||||||||| ||| || |||||||||||||||||| |||||| |||  ||||||||||| |||||||||||    
T  47005894 aaagggtctggttactgacgtattggactcatccctcgatcttagttcttacgcgttgc-ttgctcgaaag 47005825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 51664025 - 51663940
Alignment:
Q  126 tggttcgtttaatccgaaagggtctagttcctaacgtattggactcatcccacgatctgagtctttacgcgttgctttgctcgaaag 212  Q
    ||||||| |||| |||||||||||| ||| || || ||||  ||||||| | |||||| ||| ||||||||||| ||||||||||||    
T  51664025 tggttcgattaacccgaaagggtctggttactgacatattaaactcatcgctcgatctaagtttttacgcgttg-tttgctcgaaag 51663940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 35740241 - 35740193
Alignment:
Q  139 ccgaaagggtctagttcctaacgtattggactcatcccacgatctgagt 187  Q
    |||||||||||||| |  ||||||||||||||| |||| ||||||||||    
T  35740241 ccgaaagggtctagctattaacgtattggactcgtccctcgatctgagt 35740193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 212
Target Start/End: Original strand, 12566904 - 12566974
Alignment:
Q  141 gaaagggtctagttcctaacgtattggactcatcccacgatctgagtctttacgcgttgctttgctcgaaag 212  Q
    ||||||| || ||| || |||||||| ||||||||| |||||||||| ||||||||||| |||| |||||||    
T  12566904 gaaagggcctggtttctgacgtattgaactcatccctcgatctgagtttttacgcgttg-tttgttcgaaag 12566974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 18274015 - 18274076
Alignment:
Q  136 aatccgaaagggtctagttcctaacgtattggactcatcccacgatctgagtctttacgcgt 197  Q
    ||||||||||||||| ||| |||||  |||||||||||| | ||||| |||| |||||||||    
T  18274015 aatccgaaagggtctggttactaacacattggactcatcactcgatcagagtttttacgcgt 18274076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 353293 - 353236
Alignment:
Q  140 cgaaagggtctagttcctaacgtattggactcatcccacgatctgagtctttacgcgt 197  Q
    ||||||||||| ||| || || ||||||||||||||| ||||||||||  ||||||||    
T  353293 cgaaagggtctggttactgacatattggactcatccctcgatctgagttcttacgcgt 353236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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