View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0294_high_1 (Length: 459)
Name: NF0294_high_1
Description: NF0294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0294_high_1
Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 37 - 420
Target Start/End: Original strand, 33854476 - 33854855
Alignment:
Q
37
tatgataataaagcatcagcagcaaagatgattgccttgcagccatgtgtgcaaacatattaaaagtgaaaaattcaacaatgaggcattcttattactg
136
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
33854476
tatgataataaagcatcagcagcaaagatgattgccttgcagccatgtgtgcaaacatattaaaagtgaaaaattcaacaatgaggcattcttattacta
33854575
T
Q
137
cgatatatgcaaacatgtggagaagttgtagcaaagagtgaagttttttcctcttcaaaaattnnnnnnnnnnnnnctataagatcatgtatacaaatac
236
Q
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||
T
33854576
cgatatatgcaaacatgtggagaagttgtagccaagagtgaagtttttttctcttcaaaaa---aaaaaaaaaaaactataagatcatgtatacaaatac
33854672
T
Q
237
caaaaatgagactaataaatgagaactcaaacataatacttcaatcaatcaaacttacttgaacatatgcatcatcgtaaagtttgtatatcacaccctc
336
Q
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
T
33854673
aagaaatgagactaataaatgagaactcaaacataatacttcaatcaatcaaacttacttgcacatatgcatcatcgtaaagtttgtatatcacaccctc
33854772
T
Q
337
atcaacctgtgcctctgtatagtgacatctagctagaataacttcctcttcatcactgttacgcataaaaacagtcattaaaca
420
Q
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
T
33854773
atcgacctgtgcctctgtatagtgacatctagctagaataacttcctcttcatcactgttacgcataaaaacagt-attaaaca
33854855
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 393
Target Start/End: Complemental strand, 28214284 - 28214211
Alignment:
Q
320
ttgtatatcacaccctcatcaacctgtgcctctgtatagtgacatctagctagaataacttcctcttcatcact
393
Q
||||| |||||||| ||||||| | |||||||||||||||||||||||| ||| |||||| |||||||||||
T
28214284
ttgtagatcacacctccatcaactttggcctctgtatagtgacatctagcttgaagaacttcatcttcatcact
28214211
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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