View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0294_low_1 (Length: 646)
Name: NF0294_low_1
Description: NF0294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0294_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 109 - 489
Target Start/End: Original strand, 3895139 - 3895519
Alignment:
| Q |
109 |
gagagtgctggggagaaagctagagattatgcttatgatgcaaaggagagaacaaaggatgctgcagagaatgctggagagagtataagagactatgctt |
208 |
Q |
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| T |
3895139 |
gagaatgctggagagaaggctagagattatgcttatgatgcaaaggagagaacaaaggatgctgcagagaatgctggagagagtataagagactatgctt |
3895238 |
T |
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| Q |
209 |
atgatgccaaggatagaacaaaggaagctgcagagagtgctggggagaaagctagagattatgcttatgatgcaaaggaaagaaccaaggaaggagcgag |
308 |
Q |
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| T |
3895239 |
atgatgccaaggatagaacaaaggaagctgcagagagtgctggggagaaagctagagattatgcttatgatgcaaaggaaagaaccaaggaaggagcgag |
3895338 |
T |
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| Q |
309 |
ttacatggctgataagacaaaagaaggagctgagaaaacggcagagaagacgggggaggttgctgggtcggcgacagaggctttgaagagtgctggggaa |
408 |
Q |
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| T |
3895339 |
ttacatggctgataagacaaaagaaggagctgagaaaacggcggagaagacgggggaggttgctgggtcggcgacagaggctttgaagagtgctggggaa |
3895438 |
T |
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| Q |
409 |
atggcgaagaagacggcccaaggagcgtgggagacagcgaaggatgcaacacaaaagatcaaggagactgttgttggaaag |
489 |
Q |
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| T |
3895439 |
atggcgaagaagacggcccaaggagcgtgggagacagcgaaggatgcaacacaaaagatcaaggagactgttgttggaaag |
3895519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 3895163 - 3895329
Alignment:
| Q |
1 |
gattatgcttatgatgcaaaggagagaacaaaggatgctgcagagaatgctggagagagtataagagactatgcttatgatgccaaggatagaacaaagg |
100 |
Q |
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| T |
3895163 |
gattatgcttatgatgcaaaggagagaacaaaggatgctgcagagaatgctggagagagtataagagactatgcttatgatgccaaggatagaacaaagg |
3895262 |
T |
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| Q |
101 |
aagctgcagagagtgctggggagaaagctagagattatgcttatgatgcaaaggagagaacaaagga |
167 |
Q |
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| T |
3895263 |
aagctgcagagagtgctggggagaaagctagagattatgcttatgatgcaaaggaaagaaccaagga |
3895329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 43 - 235
Target Start/End: Original strand, 3895139 - 3895331
Alignment:
| Q |
43 |
gagaatgctggagagagtataagagactatgcttatgatgccaaggatagaacaaaggaagctgcagagagtgctggggagaaagctagagattatgctt |
142 |
Q |
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| T |
3895139 |
gagaatgctggagagaaggctagagattatgcttatgatgcaaaggagagaacaaaggatgctgcagagaatgctggagagagtataagagactatgctt |
3895238 |
T |
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| Q |
143 |
atgatgcaaaggagagaacaaaggatgctgcagagaatgctggagagagtataagagactatgcttatgatgccaaggatagaacaaaggaag |
235 |
Q |
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| T |
3895239 |
atgatgccaaggatagaacaaaggaagctgcagagagtgctggggagaaagctagagattatgcttatgatgcaaaggaaagaaccaaggaag |
3895331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 511 - 547
Target Start/End: Original strand, 3895538 - 3895574
Alignment:
| Q |
511 |
cgtggtagtggtggttctggtgtagtagtagatgatg |
547 |
Q |
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| T |
3895538 |
cgtggtagtggtggttctggtgtagtagtagatgatg |
3895574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 301
Target Start/End: Original strand, 3895016 - 3895079
Alignment:
| Q |
238 |
gcagagagtgctggggagaaagctagagattatgcttatgatgcaaaggaaagaaccaaggaag |
301 |
Q |
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| T |
3895016 |
gcagagaatgctggagagaaagctagagactatgcttatgaggtaaaagacagaaccaatgaag |
3895079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 3895016 - 3895056
Alignment:
| Q |
106 |
gcagagagtgctggggagaaagctagagattatgcttatga |
146 |
Q |
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| T |
3895016 |
gcagagaatgctggagagaaagctagagactatgcttatga |
3895056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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