View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0294_low_2 (Length: 459)
Name: NF0294_low_2
Description: NF0294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0294_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 37 - 420
Target Start/End: Original strand, 33854476 - 33854855
Alignment:
| Q |
37 |
tatgataataaagcatcagcagcaaagatgattgccttgcagccatgtgtgcaaacatattaaaagtgaaaaattcaacaatgaggcattcttattactg |
136 |
Q |
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| T |
33854476 |
tatgataataaagcatcagcagcaaagatgattgccttgcagccatgtgtgcaaacatattaaaagtgaaaaattcaacaatgaggcattcttattacta |
33854575 |
T |
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| Q |
137 |
cgatatatgcaaacatgtggagaagttgtagcaaagagtgaagttttttcctcttcaaaaattnnnnnnnnnnnnnctataagatcatgtatacaaatac |
236 |
Q |
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| T |
33854576 |
cgatatatgcaaacatgtggagaagttgtagccaagagtgaagtttttttctcttcaaaaa---aaaaaaaaaaaactataagatcatgtatacaaatac |
33854672 |
T |
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| Q |
237 |
caaaaatgagactaataaatgagaactcaaacataatacttcaatcaatcaaacttacttgaacatatgcatcatcgtaaagtttgtatatcacaccctc |
336 |
Q |
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| T |
33854673 |
aagaaatgagactaataaatgagaactcaaacataatacttcaatcaatcaaacttacttgcacatatgcatcatcgtaaagtttgtatatcacaccctc |
33854772 |
T |
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| Q |
337 |
atcaacctgtgcctctgtatagtgacatctagctagaataacttcctcttcatcactgttacgcataaaaacagtcattaaaca |
420 |
Q |
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| T |
33854773 |
atcgacctgtgcctctgtatagtgacatctagctagaataacttcctcttcatcactgttacgcataaaaacagt-attaaaca |
33854855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 393
Target Start/End: Complemental strand, 28214284 - 28214211
Alignment:
| Q |
320 |
ttgtatatcacaccctcatcaacctgtgcctctgtatagtgacatctagctagaataacttcctcttcatcact |
393 |
Q |
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| T |
28214284 |
ttgtagatcacacctccatcaactttggcctctgtatagtgacatctagcttgaagaacttcatcttcatcact |
28214211 |
T |
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