View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0294_low_7 (Length: 302)

Name: NF0294_low_7
Description: NF0294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0294_low_7
NF0294_low_7
[»] chr6 (1 HSPs)
chr6 (56-263)||(33854649-33854855)
[»] chr5 (1 HSPs)
chr5 (163-236)||(28214211-28214284)


Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 56 - 263
Target Start/End: Original strand, 33854649 - 33854855
Alignment:
Q  56 ctataagatcatgtatacaaataccaaaaatgagactaataaatgagaactcaaacataatacttcaatcaatcaaacttacttgaacatatgcatcatc 155  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33854649 ctataagatcatgtatacaaatacaagaaatgagactaataaatgagaactcaaacataatacttcaatcaatcaaacttacttgcacatatgcatcatc 33854748  T
Q  156 gtaaagtttgtatatcacaccctcatcaacctgtgcctctgtatagtgacatctagctagaataacttcctcttcatcactgttacgcataaaaacagtc 255  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33854749 gtaaagtttgtatatcacaccctcatcgacctgtgcctctgtatagtgacatctagctagaataacttcctcttcatcactgttacgcataaaaacagt- 33854847  T
Q  256 attaaaca 263  Q
    ||||||||    
T  33854848 attaaaca 33854855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 28214284 - 28214211
Alignment:
Q  163 ttgtatatcacaccctcatcaacctgtgcctctgtatagtgacatctagctagaataacttcctcttcatcact 236  Q
    ||||| ||||||||  ||||||| |  |||||||||||||||||||||||| ||| |||||| |||||||||||    
T  28214284 ttgtagatcacacctccatcaactttggcctctgtatagtgacatctagcttgaagaacttcatcttcatcact 28214211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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